Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 5e-25
seq4 125 6e-24
seq2 125 6e-24
seq5 111 1e-19
>seq1
Length=22123056
Score = 129 bits (142), Expect = 5e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|| ||||| | | ||| ||||| || || || |||||| || |||||||| |||| |
Sbjct 6630581 CCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6630522
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || |||| ||||||||||| || || || ||||| |||||||| || | |||
Sbjct 6630521 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 6630462
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| || |||||||||| |||||| ||| | | | | | ||||| | || |||
Sbjct 6630461 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACC 6630402
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740
|| | ||||| || || || |||| |||||||| || ||||||||| ||
Sbjct 6630401 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTG 6630351
>seq4
Length=20862834
Score = 125 bits (138), Expect = 6e-24
Identities = 183/259 (71%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 44131 TGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCACCAATACATGCGTA 44190
|||||||| ||||||| || ||| ||||||| || || |||||| || | || |
Sbjct 9425841 TGTGGAACTCTGCCCAGCTGCAGCTGGTGCGAGAGGGCAAGATGCACGGATTTCTTCGCA 9425782
Query 44191 TGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACCGCGCTCGTTCATG 44250
|||| ||| |||||| ||| | |||||| ||| || | ||||| | | |
Sbjct 9425781 TGTACTGGGCCAAGAAAATACTCGAGTGGACGGCCACGCCGGAGCAGGCGCTGGAGTACG 9425722
Query 44251 CCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGAT 44310
| ||| ||||||||||||||||| | ||||| ||||| ||||| || || || || |
Sbjct 9425721 CGATCCTGCTGAACGACAAGTACAGCCTAGACGGGCGCGATCCCAATGGCTATGTGGGCT 9425662
Query 44311 GTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGCA 44370
| |||||||||||| | || | ||||| | || ||| |||| | | || | ||| |
Sbjct 9425661 GCATGTGGTCCATTGGGGGCATACACGATATGGGCTGGAAGGAGCGAGCGATATTCGGAA 9425602
Query 44371 AAGTGCGCTACATGAACTA 44389
| | ||||||||||||||
Sbjct 9425601 AGATTCGCTACATGAACTA 9425583
>seq2
Length=30136903
Score = 125 bits (138), Expect = 6e-24
Identities = 167/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||| || | | || ||||||||| | || |||||| || |||||||| || |
Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || | || ||||||||||| || || || || | ||||||||||| | ||
Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||||||| |||||| ||||| | | | |||||| | ||||||
Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741
|||| ||||| ||||| || ||||| ||||||||||| ||||||||| |||
Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGT 19092783
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568
||| ||||| | | || ||||||||| | || |||||| || |||||||| || |
Sbjct 19092323 TCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092382
Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628
| || || | || ||||||||||| || || || || | ||||||||||| | ||
Sbjct 19092383 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 19092442
Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | |||||||||| |||||| ||||| | | | |||||| | |||||
Sbjct 19092443 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 19092502
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| ||||| ||||| || |||| ||| ||||| |||||||||||
Sbjct 19092503 CTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
>seq5
Length=28826359
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || | || |||||| || |||||||| |||| || || || | || ||
Sbjct 28457470 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 28457529
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||||||||| || || |||| |||||||| || | |||| || ||||||||||
Sbjct 28457530 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 28457589
Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706
|||||| ||| | | | | | ||||| | || ||||||| ||||| || ||
Sbjct 28457590 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 28457649
Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737
|| || | ||||||||| || || ||||||
Sbjct 28457650 GCCAGTGAGAGTTTTCACGAAGATTTGCATT 28457680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793566190480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |