Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5 168 7e-37 seq1 122 9e-23 seq2 104 2e-17 >seq5 Length=28826359 Score = 168 bits (186), Expect = 7e-37 Identities = 1122/1781 (63%), Gaps = 55/1781 (3%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 |||||||||||| ||||||| || | || ||||| || || || ||||| || || || Sbjct 15306503 CAACACATGCTGATGCGCGTCGCTCTTGGTATTCATGGAGACGATATTGATGCGGCAGTG 15306562 Query 7624 GAAACGTACCAAATGATGTCTTTGAA--ACAGTTTACGCACGCTTCGCCCACCATGTTTG 7681 ||||| ||| | | ||||| ||| | | |||||||| || ||||| || | |||| Sbjct 15306563 GAAACTTACAACCTACTGTCT--GAACGATACTTTACGCATGCCTCGCCAACGCTTTTTG 15306620 Query 7682 CCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCG--CGAAGA 7739 | || | ||||| ||||||||||||||||||||| | | || ||| || | Sbjct 15306621 CTGCTGCTACAAATCGACCTCAATTGTCCTCGTGTTTTCTTTTGACAATGAATTCGGATT 15306680 Query 7740 CAGCATCGACGGCATTTACAACAC-GCTGCGCGATTGCGCCAATATTTCCAAATACGGCG 7798 || || || || |||| || | | || | || | || |||||||||| | | Sbjct 15306681 CA--ATTGAAGGTATTTTTAAATCAGTTGAACAAT-GTGCACTGATTTCCAAATCAGCAG 15306737 Query 7799 GCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACC- 7857 | ||||| || || || || | | | || || || || | | || ||| | | Sbjct 15306738 GTGGAATCGGACT-AATGTTCATTGCATTCGTGCTAAAGGCA-CTTCAATATGTGGAACG 15306795 Query 7858 AACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACAT 7917 ||||| | | | || |||| || ||||| | || || ||||| | || ||| || Sbjct 15306796 AACGGTACGTCGAATGGATTAGTTCCAATGTTAAGAGTTTTTAATAATGTGGCTCGATAT 15306855 Query 7918 GTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCAC 7974 || || ||||| || ||| | || ||| ||| || ||||| ||||| ||||| Sbjct 15306856 GTTGATCAGGGAGGTGGAAAAAGACCTGGTGCCTTTGCTATTTATTTAGAGCCCTGGCAT 15306915 Query 7975 GCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCG 8034 | || ||| | | || | || | |||| || ||||| | | ||| Sbjct 15306916 TCAGATGTTTTTGAGTTTTTAGACCTCAAAAGAAACACTGGAAAAGAAGAAAACCGAGCA 15306975 Query 8035 CGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGAC 8094 || ||||| || | || || ||| | || ||||| || |||| || ||| | | Sbjct 15306976 CGTGATCTTTTTTACGCTTTATGGATTCCTGATCTTTTCATGAAACGTGTTGAGGCAAAT 15307035 Query 8095 GCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCA 8154 | | ||||| | ||||| || || || ||| | || | |||| || | Sbjct 15307036 GAAAGCTGGTCATTGATGTGTCCACATAAATGTCCTGGCCTTCAAGATGTTTGGGGCGAA 15307095 Query 8155 AAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCG----GCA-AG 8209 ||||||||| || | || |||| || || || || ||||||| | | || Sbjct 15307096 AAATTTGAAGAACTCTATGTCAAATATGAGCAAGAAGG-----ACGTGCGAATCGAACAG 15307150 Query 8210 TGAAAGCGCGCGACCTGCACCGC--GCCATTATCGAATGTCAAAACGAAACCGGTATGCC 8267 || |||| | | || | | |||||||| |||| ||| ||||| |||| || Sbjct 15307151 TGGAAGCCCAGG--CTTTATGGTTTGCCATTATAGAATCGCAAGTGGAAACTGGTAACCC 15307208 Query 8268 GTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCAT 8327 |||||||| | || || | ||||| || ||||||||| || || ||||| || Sbjct 15307209 ATACATGCTTTTTAAGGATTCCTGCAATAGAAAGAGCAATCAACAAAATGTTGGCACTAT 15307268 Query 8328 TTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGT 8387 | ||||| ||| | || | |||||||| ||||| || || || || | || || Sbjct 15307269 TAAATGCAGTAATTTATGTACAGAAATTGTCGAGTACTCAGCACCTGATGAGATCGCTGT 15307328 Query 8388 TTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGA 8447 |||||| |||| || | | ||| |||||| | | | ||| || || || Sbjct 15307329 CTGCAATTTAGCTTCAATAGCACTGAACATGTTCGTA-ACAGCAGA--AAAAACGTATGA 15307385 Query 8448 CTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAA---TTTAGATCGCATCAT 8504 || || |||| ||| | | || || || ||| | | | || || Sbjct 15307386 TTTCAAAAAATTAAAAGAAGTAACCAAA---ACTGTTGCCAAAAATCTTAACAAAATTAT 15307442 Query 8505 TGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTA-TCGAACATGCGCCACAGACCCG 8563 || |||| | ||| || ||| |||||| | | | || || | | || | || Sbjct 15307443 AGACATCAACTATTACCCTTTGCCAGAAGC-CAAGAAGTCCAATTTAAGGCATCGTCCAA 15307501 Query 8564 TTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAA 8623 | || | || | |||||||| || ||||| || | |||| | ||||| |||| Sbjct 15307502 TCGGTATAGGTATTCAAGGTCTAGCTGACGCTTTAATTTTAATGCGTTTTCCCTATGAAA 15307561 Query 8624 GCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAG 8683 || ||||||| | | | ||| | ||||| ||||| | |||| || || ||| Sbjct 15307562 GCGAAGAAGCCGGTCTTTTAAACCAACAAATATTTGAAACAATTTATTTTGGAGCTCTAG 15307621 Query 8684 AAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTG 8743 |||| || ||| ||||||| | || ||| || | || ||| | || | || || |||| Sbjct 15307622 AAGCTAGTTGTGAACTTGCTCAAGCATTTGGTCCATATGAAACCTATGAAGGAAGTCCTG 15307681 Query 8744 CCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATT 8803 ||| ||||| | ||||| || |||||| || || || || | ||| ||| Sbjct 15307682 TAAGCAAAGGAATTCTACAATATGATATGTGGGATAAAACTCCAACGAACCTATGGGATT 15307741 Query 8804 GG---AGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGG 8860 || ||| ||||| | ||| | ||| | | |||||| |||| || | Sbjct 15307742 GGCAAAGCC---TGAAAGAAGACATTAAAAAGCACGGAATTAGGAATTCGTTGTTAGTAG 15307798 Query 8861 CTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGT 8920 | ||||| || || | ||||| ||||| ||||| || |||||||| || || || | Sbjct 15307799 CGCCGATGCCTACAGCATCTACTGCACAAATTATGGGTAATAACGAATCATTCGAACCAT 15307858 Query 8921 TCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTC 8980 |||| || | || ||||||||| || | || || ||| | || | |||| || Sbjct 15307859 ATACCACAAATATTTATACGAGACGAGTATTATCTGGTGAATTTCAAGTGGTCAATCATC 15307918 Query 8981 ATTTGATGCGCGACTTGATCGAAGCGGGCGTTTACGACGACAAAATGCGCGATGCCATCG 9040 |||| || | || || | || || | | | || || | ||| || || Sbjct 15307919 ATTTATTGAGGGATTTAACAGAGTTGGACTTATGGGATGATGAGATGAAAAATAAAATAA 15307978 Query 9041 TGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGT 9100 | || ||| | |||| | ||||| | | || ||| | || || || | Sbjct 15307979 TTTCCAGCAGGGGCTCCATTCAAGATATTGAAACTATTCCCCAAAAGGTTCGCGATCTTT 15308038 Query 9101 ATAAAACCGTTTGGGAAATGA-AGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGC 9159 ||||||| || |||||||| || ||| | | || |||||||| |||||||| Sbjct 15308039 ATAAAACTGTATGGGAAATTTCAGTAAAATCCACA-ATTAAAATGGCTGCTGATAGAGGT 15308097 Query 9160 GCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACTTACGCT--- 9216 || ||||||||||| ||||| || ||||| || |||||| | || | |||| Sbjct 15308098 GCATTTATTGATCAAAGTCAGTCGTTTAATGTTCACGTAGCAGAGCCCAACTACGGAAAA 15308157 Query 9217 TTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTAT 9276 |||| |||| | |||| ||| | |||||| || ||||||| || ||||||||| Sbjct 15308158 TTGACATCCA---TACATTTTTTCTCCTGGAAAGCTGGACTAAAAACCGGAATGTACTAT 15308214 Query 9277 TTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGT 9317 || ||||||||||| ||||| | | || ||||||| || Sbjct 15308215 TTACGCACAAAACCTGCCGCCAACGCAATACAATTTACTGT 15308255 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || || || ||||| || |||||||||||| | ||| | Sbjct 28457462 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 28457521 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || || |||| |||||||||||| || || ||||| || Sbjct 28457522 CCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 28457581 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | ||||| || | || || || | || Sbjct 28457582 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTG 28457641 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || | |||||| ||||| ||||||||||| Sbjct 28457642 ATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 ||||| ||||| |||||||| || || | || | | | | || || | || ||||| Sbjct 15755921 GTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCA-TCTTCCAATTGCTTGCC 15755979 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || || ||||||||||| ||||| || || || |||||||| || || || || ||| Sbjct 15755980 AGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTT 15756039 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 ||| || | || || || | ||| || || ||||| ||||| || || |||| || Sbjct 15756040 GACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGT 15756099 Query 134696 TTTAACGAAAATTTGCAT 134713 || || || || ||||| Sbjct 15756100 CTTTACAAAGATCTGCAT 15756117 >seq1 Length=22123056 Score = 122 bits (134), Expect = 9e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| | ||||| ||||| || |||||||||||| | || | Sbjct 6630572 AGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 6630513 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || ||||||||||||||||| || || ||||| || Sbjct 6630512 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 6630453 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| || | ||||| || | || || ||||| || Sbjct 6630452 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTG 6630393 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||||| |||||||| ||||||||| Sbjct 6630392 ATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTG 6630351 >seq2 Length=30136903 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| | || || || || ||||| || ||||||||||| | Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| || || || | ||||||||| || || || Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || || | |||||||| | ||||| Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 || || || |||||||| || || || ||||| || || || |||||||||| || Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTATT 19092786 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| || | ||| |||| ||| | || || || || ||||| || ||||||||||| Sbjct 19092323 TCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092382 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | || || ||||| ||||| || || || | ||||||||| || || || Sbjct 19092383 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 19092442 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || || || || || || || | |||||||| | ||||| Sbjct 19092443 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 19092502 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| | ||| || ||||| || ||||| Sbjct 19092503 CTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398362095120