Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq5 168 7e-37
seq1 122 9e-23
seq2 104 2e-17
>seq5
Length=28826359
Score = 168 bits (186), Expect = 7e-37
Identities = 1122/1781 (63%), Gaps = 55/1781 (3%)
Strand=Plus/Plus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
|||||||||||| ||||||| || | || ||||| || || || ||||| || || ||
Sbjct 15306503 CAACACATGCTGATGCGCGTCGCTCTTGGTATTCATGGAGACGATATTGATGCGGCAGTG 15306562
Query 7624 GAAACGTACCAAATGATGTCTTTGAA--ACAGTTTACGCACGCTTCGCCCACCATGTTTG 7681
||||| ||| | | ||||| ||| | | |||||||| || ||||| || | ||||
Sbjct 15306563 GAAACTTACAACCTACTGTCT--GAACGATACTTTACGCATGCCTCGCCAACGCTTTTTG 15306620
Query 7682 CCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCG--CGAAGA 7739
| || | ||||| ||||||||||||||||||||| | | || ||| || |
Sbjct 15306621 CTGCTGCTACAAATCGACCTCAATTGTCCTCGTGTTTTCTTTTGACAATGAATTCGGATT 15306680
Query 7740 CAGCATCGACGGCATTTACAACAC-GCTGCGCGATTGCGCCAATATTTCCAAATACGGCG 7798
|| || || || |||| || | | || | || | || |||||||||| | |
Sbjct 15306681 CA--ATTGAAGGTATTTTTAAATCAGTTGAACAAT-GTGCACTGATTTCCAAATCAGCAG 15306737
Query 7799 GCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACC- 7857
| ||||| || || || || | | | || || || || | | || ||| | |
Sbjct 15306738 GTGGAATCGGACT-AATGTTCATTGCATTCGTGCTAAAGGCA-CTTCAATATGTGGAACG 15306795
Query 7858 AACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACAT 7917
||||| | | | || |||| || ||||| | || || ||||| | || ||| ||
Sbjct 15306796 AACGGTACGTCGAATGGATTAGTTCCAATGTTAAGAGTTTTTAATAATGTGGCTCGATAT 15306855
Query 7918 GTAGACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCAC 7974
|| || ||||| || ||| | || ||| ||| || ||||| ||||| |||||
Sbjct 15306856 GTTGATCAGGGAGGTGGAAAAAGACCTGGTGCCTTTGCTATTTATTTAGAGCCCTGGCAT 15306915
Query 7975 GCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCG 8034
| || ||| | | || | || | |||| || ||||| | | |||
Sbjct 15306916 TCAGATGTTTTTGAGTTTTTAGACCTCAAAAGAAACACTGGAAAAGAAGAAAACCGAGCA 15306975
Query 8035 CGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGAC 8094
|| ||||| || | || || ||| | || ||||| || |||| || ||| | |
Sbjct 15306976 CGTGATCTTTTTTACGCTTTATGGATTCCTGATCTTTTCATGAAACGTGTTGAGGCAAAT 15307035
Query 8095 GCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCA 8154
| | ||||| | ||||| || || || ||| | || | |||| || |
Sbjct 15307036 GAAAGCTGGTCATTGATGTGTCCACATAAATGTCCTGGCCTTCAAGATGTTTGGGGCGAA 15307095
Query 8155 AAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCG----GCA-AG 8209
||||||||| || | || |||| || || || || ||||||| | | ||
Sbjct 15307096 AAATTTGAAGAACTCTATGTCAAATATGAGCAAGAAGG-----ACGTGCGAATCGAACAG 15307150
Query 8210 TGAAAGCGCGCGACCTGCACCGC--GCCATTATCGAATGTCAAAACGAAACCGGTATGCC 8267
|| |||| | | || | | |||||||| |||| ||| ||||| |||| ||
Sbjct 15307151 TGGAAGCCCAGG--CTTTATGGTTTGCCATTATAGAATCGCAAGTGGAAACTGGTAACCC 15307208
Query 8268 GTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCAT 8327
|||||||| | || || | ||||| || ||||||||| || || ||||| ||
Sbjct 15307209 ATACATGCTTTTTAAGGATTCCTGCAATAGAAAGAGCAATCAACAAAATGTTGGCACTAT 15307268
Query 8328 TTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGT 8387
| ||||| ||| | || | |||||||| ||||| || || || || | || ||
Sbjct 15307269 TAAATGCAGTAATTTATGTACAGAAATTGTCGAGTACTCAGCACCTGATGAGATCGCTGT 15307328
Query 8388 TTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGA 8447
|||||| |||| || | | ||| |||||| | | | ||| || || ||
Sbjct 15307329 CTGCAATTTAGCTTCAATAGCACTGAACATGTTCGTA-ACAGCAGA--AAAAACGTATGA 15307385
Query 8448 CTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGTACGCAA---TTTAGATCGCATCAT 8504
|| || |||| ||| | | || || || ||| | | | || ||
Sbjct 15307386 TTTCAAAAAATTAAAAGAAGTAACCAAA---ACTGTTGCCAAAAATCTTAACAAAATTAT 15307442
Query 8505 TGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTA-TCGAACATGCGCCACAGACCCG 8563
|| |||| | ||| || ||| |||||| | | | || || | | || | ||
Sbjct 15307443 AGACATCAACTATTACCCTTTGCCAGAAGC-CAAGAAGTCCAATTTAAGGCATCGTCCAA 15307501
Query 8564 TTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAA 8623
| || | || | |||||||| || ||||| || | |||| | ||||| ||||
Sbjct 15307502 TCGGTATAGGTATTCAAGGTCTAGCTGACGCTTTAATTTTAATGCGTTTTCCCTATGAAA 15307561
Query 8624 GCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAG 8683
|| ||||||| | | | ||| | ||||| ||||| | |||| || || |||
Sbjct 15307562 GCGAAGAAGCCGGTCTTTTAAACCAACAAATATTTGAAACAATTTATTTTGGAGCTCTAG 15307621
Query 8684 AAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTG 8743
|||| || ||| ||||||| | || ||| || | || ||| | || | || || ||||
Sbjct 15307622 AAGCTAGTTGTGAACTTGCTCAAGCATTTGGTCCATATGAAACCTATGAAGGAAGTCCTG 15307681
Query 8744 CCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATT 8803
||| ||||| | ||||| || |||||| || || || || | ||| |||
Sbjct 15307682 TAAGCAAAGGAATTCTACAATATGATATGTGGGATAAAACTCCAACGAACCTATGGGATT 15307741
Query 8804 GG---AGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGG 8860
|| ||| ||||| | ||| | ||| | | |||||| |||| || |
Sbjct 15307742 GGCAAAGCC---TGAAAGAAGACATTAAAAAGCACGGAATTAGGAATTCGTTGTTAGTAG 15307798
Query 8861 CTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGT 8920
| ||||| || || | ||||| ||||| ||||| || |||||||| || || || |
Sbjct 15307799 CGCCGATGCCTACAGCATCTACTGCACAAATTATGGGTAATAACGAATCATTCGAACCAT 15307858
Query 8921 TCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTC 8980
|||| || | || ||||||||| || | || || ||| | || | |||| ||
Sbjct 15307859 ATACCACAAATATTTATACGAGACGAGTATTATCTGGTGAATTTCAAGTGGTCAATCATC 15307918
Query 8981 ATTTGATGCGCGACTTGATCGAAGCGGGCGTTTACGACGACAAAATGCGCGATGCCATCG 9040
|||| || | || || | || || | | | || || | ||| || ||
Sbjct 15307919 ATTTATTGAGGGATTTAACAGAGTTGGACTTATGGGATGATGAGATGAAAAATAAAATAA 15307978
Query 9041 TGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGT 9100
| || ||| | |||| | ||||| | | || ||| | || || || |
Sbjct 15307979 TTTCCAGCAGGGGCTCCATTCAAGATATTGAAACTATTCCCCAAAAGGTTCGCGATCTTT 15308038
Query 9101 ATAAAACCGTTTGGGAAATGA-AGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGC 9159
||||||| || |||||||| || ||| | | || |||||||| ||||||||
Sbjct 15308039 ATAAAACTGTATGGGAAATTTCAGTAAAATCCACA-ATTAAAATGGCTGCTGATAGAGGT 15308097
Query 9160 GCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACTTACGCT--- 9216
|| ||||||||||| ||||| || ||||| || |||||| | || | ||||
Sbjct 15308098 GCATTTATTGATCAAAGTCAGTCGTTTAATGTTCACGTAGCAGAGCCCAACTACGGAAAA 15308157
Query 9217 TTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTAT 9276
|||| |||| | |||| ||| | |||||| || ||||||| || |||||||||
Sbjct 15308158 TTGACATCCA---TACATTTTTTCTCCTGGAAAGCTGGACTAAAAACCGGAATGTACTAT 15308214
Query 9277 TTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGT 9317
|| ||||||||||| ||||| | | || ||||||| ||
Sbjct 15308215 TTACGCACAAAACCTGCCGCCAACGCAATACAATTTACTGT 15308255
Score = 102 bits (112), Expect = 8e-17
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| || || || ||||| || |||||||||||| | ||| |
Sbjct 28457462 AGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 28457521
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| || ||||| || || || || |||| |||||||||||| || || ||||| ||
Sbjct 28457522 CCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 28457581
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| || | ||||| || | || || || | ||
Sbjct 28457582 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTG 28457641
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716
||||| || || || | |||||| ||||| |||||||||||
Sbjct 28457642 ATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 134517 GTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575
||||| ||||| |||||||| || || | || | | | | || || | || |||||
Sbjct 15755921 GTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCA-TCTTCCAATTGCTTGCC 15755979
Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635
|| || ||||||||||| ||||| || || || |||||||| || || || || |||
Sbjct 15755980 AGCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTT 15756039
Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695
||| || | || || || | ||| || || ||||| ||||| || || |||| ||
Sbjct 15756040 GACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGT 15756099
Query 134696 TTTAACGAAAATTTGCAT 134713
|| || || || |||||
Sbjct 15756100 CTTTACAAAGATCTGCAT 15756117
>seq1
Length=22123056
Score = 122 bits (134), Expect = 9e-23
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| ||||| || | ||| | ||||| ||||| || |||||||||||| | || |
Sbjct 6630572 AGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 6630513
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| || ||||| ||||| || || ||||||||||||||||| || || ||||| ||
Sbjct 6630512 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCC 6630453
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| || | ||||| || | || || ||||| ||
Sbjct 6630452 TTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTG 6630393
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || || | ||||| |||||||| |||||||||
Sbjct 6630392 ATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTTG 6630351
>seq2
Length=30136903
Score = 104 bits (114), Expect = 2e-17
Identities = 164/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| |||| ||| | || || || || ||||| || ||||||||||| |
Sbjct 19092552 CCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092611
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || ||||| ||||| || || || | ||||||||| || || ||
Sbjct 19092612 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 19092671
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || || || || | |||||||| | |||||
Sbjct 19092672 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092731
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721
|| || || |||||||| || || || ||||| || || || |||||||||| ||
Sbjct 19092732 TCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTGTATT 19092786
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545
||| || | ||| |||| ||| | || || || || ||||| || |||||||||||
Sbjct 19092323 TCCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092382
Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605
|| ||| | || || ||||| ||||| || || || | ||||||||| || || ||
Sbjct 19092383 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGG 19092442
Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665
|| || || || || || || || || || || | |||||||| | |||||
Sbjct 19092443 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 19092502
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || |||||||| ||||| | ||| || ||||| || |||||
Sbjct 19092503 CTCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398362095120
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