Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 645 4e-180 >seq5 Length=28826359 Score = 645 bits (714), Expect = 4e-180 Identities = 1259/1847 (68%), Gaps = 21/1847 (1%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| |||| ||||||||| |||||||| || || |||| | | ||| Sbjct 15308231 GCAGGTTTTGTGCGTAAATAGTACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAA 15308172 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || ||| | ||| || | || || |||| |||| ||| | ||| |||||| Sbjct 15308171 TGTATGGATGTCAATTTTCCGTAGTTGGGCTCTGCTACGTGAACATTAAACGACTGACTT 15308112 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| || || || |||||||| || |||||||| || | ||| | ||||||| Sbjct 15308111 TGATCAATAAATGCACCTCTATCAGCAGCCATTTTAATTGTGGATTTTACTGAAATTTCC 15308052 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCT---GGAA--GGCTCG-TATTTTGAATG 68628 || | ||| ||| ||| | | | | | | | |||| | || ||| ||||||| Sbjct 15308051 CATACAGTTTTATAAA---GATCGCGAACCTTTTGGGGAATAGTTTCAATATCTTGAATG 15307995 Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688 || || | ||| || ||| |||| || |||||||||| ||| || | ||| ||| Sbjct 15307994 GAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCATCCCATAAGTCCAACTCTGTT 15307935 Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748 ||| | || | | ||| |||| || | ||||||||| |||||||| |||| | || Sbjct 15307934 AAATCCCTCAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA 15307875 Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 |||||||| ||||||||||||| | ||||| ||||| |||| |||||| ||||| ||| Sbjct 15307874 TAAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGAT 15307815 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 || || ||||| || || || || || ||| |||| || || || | || | ||| Sbjct 15307814 GCTGTAGGCATCGGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCT 15307755 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928 || || || ||||||||| || | | ||| || ||| | ||| ||||||||| Sbjct 15307754 TTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAGTTTTATCCCACATATCATATTGTAGA 15307695 Query 68929 ATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988 ||||| || ||| || ||| | ||| |||||||| || || || ||| ||| Sbjct 15307694 ATTCCTTTGCTTACAGGACTTCCTTCATAGGTTTCATATGGACCAAATGCTTGAGCAAGT 15307635 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 |||||||| || |||| || || ||||||||||||| || || | | || | | Sbjct 15307634 TCACAACTAGCTTCTAGAGCTCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGA 15307575 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 |||||| || || | ||| || | | | ||| || || || || | || ||| Sbjct 15307574 CCGGCTTCTTCGCTTTCATAGGGAAAACGCATTAAAATTAAAGCGTCAGCTAGACCTTGA 15307515 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTT-TCAGCTTCTGGAATAGGATA 69167 | || |||||||| || | ||| || | | ||| |||| | |||||||| | ||| || Sbjct 15307514 ATACCTATACCGATTGGACGATGCCT-TAAATTGGACTTCTTGGCTTCTGGCAAAGGGTA 15307456 Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227 ||| || || ||||||||||| ||||||||| | | || ||| || || |||| Sbjct 15307455 ATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAA 15307396 Query 69228 TTTGAGAAAATCAAA---TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAG 69284 ||| |||||| | | | | || | || ||||| |||||||||| || |||| Sbjct 15307395 TTTTTTGAAATCATACGTTTTTTCTGCTGTTACGAACATGTTCAGTGCTATTGAAGCTAA 15307336 Query 69285 ATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACT 69344 ||| || || || | ||||| || || || | | || |||||||||| |||||| Sbjct 15307335 ATTGCAGACAGCGATCTCATCAGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACT 15307276 Query 69345 ACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAG 69404 ||||| ||||| || | |||||| ||||| |||||| | || |||| ||||| |||| Sbjct 15307275 GCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAG 15307216 Query 69405 AATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGC 69464 || | || |||||||||| | || ||||| ||||| | ||| | || || Sbjct 15307215 CATGTATGGGTTACCAGTTTCCACTTGCGATTCTATAATGGCAAACCATAAAGCCTGGGC 15307156 Query 69465 ATTTATTACGGTC--TTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAAT 69522 | | | | || || ||| |||| ||||||| ||| || ||| ||| Sbjct 15307155 TTCCACT--GTTCGATTCGCACGTCCTTCTTGCTCATATTTGACATAGAGTTCTTCAAAT 15307098 Query 69523 TCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACA 69582 | || ||||||||||| | | |||||||||| || |||||||||||||||||| Sbjct 15307097 TTTTCGCCCCAAACATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGACCAGCTT 15307038 Query 69583 TCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCT 69642 |||| ||| ||| |||||||| || ||||| |||||||| | ||| ||| ||||| Sbjct 15307037 TCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCA 15306978 Query 69643 CTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCA 69702 | | || |||||||| ||||| || ||| |||| || || | |||||| | || ||| Sbjct 15306977 CGTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCT 15306918 Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762 |||||||| || |||| ||| || || | | | || |||| ||| ||||||||||| Sbjct 15306917 GAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCA 15306858 Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAA-TAATACCATTAGATTTACC 69821 | |||| || |||||| | ||||| | ||| |||| |||| ||||| || |||| Sbjct 15306857 ACATATCGAGCCACATTATTAAAAACTCTTAACATTGGAACTAAT-CCATTCGACGTACC 15306799 Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCC 69881 || |||||| | || || | ||| | || ||||| | || | ||| || ||||| Sbjct 15306798 GTTCGTTCCACATATTGAAGTGCCTTTAGCACGAATGCAATGAACA-TTAGTCCGATTCC 15306740 Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941 ||||| ||| || || || ||||| ||| | || | | | ||||| || || Sbjct 15306739 ACCTGCTGATTTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGA 15306680 Query 69942 ATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001 ||| |||| | | ||||||||| |||| |||| | | | || | ||| Sbjct 15306679 ATCCGAATTCATTGTCAAAAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAGC 15306620 Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 ||| | || || || || || || || || |||||| || || ||||| ||||| | Sbjct 15306619 AAAAAGCGTTGGCGAGGCATGCGTAAAGTATCGTTCAGACAGTAGGTTGTAAGTTTCCAC 15306560 Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 || | || ||||| |||||| || | ||||| ||||||| ||| || || || Sbjct 15306559 TGCCGCATCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGG 15306500 Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181 |||||| | |||| |||||| || | || || || || || || ||||| || Sbjct 15306499 ACGTTCTGCAATTTTCCCATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCC 15306440 Query 70182 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 ||||||||| || ||| |||| || ||||||||| |||| |||| Sbjct 15306439 AAAATAGTTATAACCAAAATCTCGGTCATAAATAATAGCAGAGTTTA 15306393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908748481840