Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq5 645 4e-180
>seq5
Length=28826359
Score = 645 bits (714), Expect = 4e-180
Identities = 1259/1847 (68%), Gaps = 21/1847 (1%)
Strand=Plus/Minus
Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454
|| |||||||| |||| ||||||||| |||||||| || || |||| | | |||
Sbjct 15308231 GCAGGTTTTGTGCGTAAATAGTACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAA 15308172
Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514
|| || ||| | ||| || | || || |||| |||| ||| | ||| ||||||
Sbjct 15308171 TGTATGGATGTCAATTTTCCGTAGTTGGGCTCTGCTACGTGAACATTAAACGACTGACTT 15308112
Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574
||||| || || || |||||||| || |||||||| || | ||| | |||||||
Sbjct 15308111 TGATCAATAAATGCACCTCTATCAGCAGCCATTTTAATTGTGGATTTTACTGAAATTTCC 15308052
Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCT---GGAA--GGCTCG-TATTTTGAATG 68628
|| | ||| ||| ||| | | | | | | | |||| | || ||| |||||||
Sbjct 15308051 CATACAGTTTTATAAA---GATCGCGAACCTTTTGGGGAATAGTTTCAATATCTTGAATG 15307995
Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688
|| || | ||| || ||| |||| || |||||||||| ||| || | ||| |||
Sbjct 15307994 GAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCATCCCATAAGTCCAACTCTGTT 15307935
Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748
||| | || | | ||| |||| || | ||||||||| |||||||| |||| | ||
Sbjct 15307934 AAATCCCTCAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA 15307875
Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808
|||||||| ||||||||||||| | ||||| ||||| |||| |||||| ||||| |||
Sbjct 15307874 TAAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGAT 15307815
Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868
|| || ||||| || || || || || ||| |||| || || || | || | |||
Sbjct 15307814 GCTGTAGGCATCGGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCT 15307755
Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928
|| || || ||||||||| || | | ||| || ||| | ||| |||||||||
Sbjct 15307754 TTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAGTTTTATCCCACATATCATATTGTAGA 15307695
Query 68929 ATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988
||||| || ||| || ||| | ||| |||||||| || || || ||| |||
Sbjct 15307694 ATTCCTTTGCTTACAGGACTTCCTTCATAGGTTTCATATGGACCAAATGCTTGAGCAAGT 15307635
Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048
|||||||| || |||| || || ||||||||||||| || || | | || | |
Sbjct 15307634 TCACAACTAGCTTCTAGAGCTCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAAAGA 15307575
Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108
|||||| || || | ||| || | | | ||| || || || || | || |||
Sbjct 15307574 CCGGCTTCTTCGCTTTCATAGGGAAAACGCATTAAAATTAAAGCGTCAGCTAGACCTTGA 15307515
Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTT-TCAGCTTCTGGAATAGGATA 69167
| || |||||||| || | ||| || | | ||| |||| | |||||||| | ||| ||
Sbjct 15307514 ATACCTATACCGATTGGACGATGCCT-TAAATTGGACTTCTTGGCTTCTGGCAAAGGGTA 15307456
Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAG 69227
||| || || ||||||||||| ||||||||| | | || ||| || || ||||
Sbjct 15307455 ATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTAA 15307396
Query 69228 TTTGAGAAAATCAAA---TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAG 69284
||| |||||| | | | | || | || ||||| |||||||||| || ||||
Sbjct 15307395 TTTTTTGAAATCATACGTTTTTTCTGCTGTTACGAACATGTTCAGTGCTATTGAAGCTAA 15307336
Query 69285 ATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACT 69344
||| || || || | ||||| || || || | | || |||||||||| ||||||
Sbjct 15307335 ATTGCAGACAGCGATCTCATCAGGTGCTGAGTACTCGACAATTTCTGTACATAAATTACT 15307276
Query 69345 ACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAG 69404
||||| ||||| || | |||||| ||||| |||||| | || |||| ||||| ||||
Sbjct 15307275 GCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAAG 15307216
Query 69405 AATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGC 69464
|| | || |||||||||| | || ||||| ||||| | ||| | || ||
Sbjct 15307215 CATGTATGGGTTACCAGTTTCCACTTGCGATTCTATAATGGCAAACCATAAAGCCTGGGC 15307156
Query 69465 ATTTATTACGGTC--TTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAAT 69522
| | | | || || ||| |||| ||||||| ||| || ||| |||
Sbjct 15307155 TTCCACT--GTTCGATTCGCACGTCCTTCTTGCTCATATTTGACATAGAGTTCTTCAAAT 15307098
Query 69523 TCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACA 69582
| || ||||||||||| | | |||||||||| || ||||||||||||||||||
Sbjct 15307097 TTTTCGCCCCAAACATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGACCAGCTT 15307038
Query 69583 TCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCT 69642
|||| ||| ||| |||||||| || ||||| |||||||| | ||| ||| |||||
Sbjct 15307037 TCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGATCA 15306978
Query 69643 CTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCA 69702
| | || |||||||| ||||| || ||| |||| || || | |||||| | || |||
Sbjct 15306977 CGTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACATCT 15306918
Query 69703 GAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCT 69762
|||||||| || |||| ||| || || | | | || |||| ||| |||||||||||
Sbjct 15306917 GAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGATCA 15306858
Query 69763 ATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAA-TAATACCATTAGATTTACC 69821
| |||| || |||||| | ||||| | ||| |||| |||| ||||| || ||||
Sbjct 15306857 ACATATCGAGCCACATTATTAAAAACTCTTAACATTGGAACTAAT-CCATTCGACGTACC 15306799
Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCC 69881
|| |||||| | || || | ||| | || ||||| | || | ||| || |||||
Sbjct 15306798 GTTCGTTCCACATATTGAAGTGCCTTTAGCACGAATGCAATGAACA-TTAGTCCGATTCC 15306740
Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941
||||| ||| || || || ||||| ||| | || | | | ||||| || ||
Sbjct 15306739 ACCTGCTGATTTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATTGA 15306680
Query 69942 ATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATT 70001
||| |||| | | ||||||||| |||| |||| | | | || | |||
Sbjct 15306679 ATCCGAATTCATTGTCAAAAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAGC 15306620
Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061
||| | || || || || || || || || |||||| || || ||||| ||||| |
Sbjct 15306619 AAAAAGCGTTGGCGAGGCATGCGTAAAGTATCGTTCAGACAGTAGGTTGTAAGTTTCCAC 15306560
Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121
|| | || ||||| |||||| || | ||||| ||||||| ||| || || ||
Sbjct 15306559 TGCCGCATCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGG 15306500
Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181
|||||| | |||| |||||| || | || || || || || || ||||| ||
Sbjct 15306499 ACGTTCTGCAATTTTCCCATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCC 15306440
Query 70182 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228
||||||||| || ||| |||| || ||||||||| |||| ||||
Sbjct 15306439 AAAATAGTTATAACCAAAATCTCGGTCATAAATAATAGCAGAGTTTA 15306393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908748481840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |