Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 143 3e-29 seq4 91.5 2e-13 >seq5 Length=28826359 Score = 143 bits (158), Expect = 3e-29 Identities = 582/906 (64%), Gaps = 17/906 (2%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || ||||| || |||||||| || |||| |||||||||| |||||||| || || Sbjct 15307874 TAAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGAT 15307815 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 ||||| ||||| || || | || | || | || || | || || ||| ||| Sbjct 15307814 GCTGTAGGCATCGGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCT 15307755 Query 110828 TTGAGAACATCCCAGTCG--TAGTTGAGCTTG-GTTTCACCTTCCCACATGTCAAACTGA 110884 || || | ||| || ||| | | | | |||| | |||||||| ||| | || Sbjct 15307754 TTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAGTTTTA---TCCCACATATCATATTGT 15307698 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | |||| | | ||| || ||| |||||||||| | ||| |||| ||| Sbjct 15307697 AGAATTCCTTTGCTTACAGGACTTCCTTCATAGGTTTCATATGGACCAAATGCTTGAGCA 15307638 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | |||||| || || || || | | | ||| || |||||||| || | || | Sbjct 15307637 AGTTCACAACTAGCTTCTAGAGCTCCAAAATAAATTGTTTCAAATATTTGTTGGTTTAAA 15307578 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 |||||| || ||| | | | || ||||| || | || || |||||| Sbjct 15307577 AGACCGGCTTCTTCGCTTTCATAGGGAAAACGCATTAAAATTAAAGCGTCAGCTAGACCT 15307518 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACGG 111122 |||| ||| | ||| || || | || | | ||| ||||| || ||| ||| || Sbjct 15307517 TGAATACCTATACCGATTGGACGATGCCTTAAATTGGACTTCTTGGCT-TCTGGCAAAGG 15307459 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 | ||| | || |||| || | | ||| |||||||||| |||| | || || | ||| | Sbjct 15307458 G-TAATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTT 15307400 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 111242 | ||||| ||||| | || | ||| | | || || | || || |||| Sbjct 15307399 TTAATTTTTTGAAATCATACGTTT---TTTCTGCTGTTACGAACATGTTCAGTGCTATTG 15307343 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATA 111302 | || |||||||| ||||| ||||||| ||| |||||| | |||||||||||||| Sbjct 15307342 AAGCTAAATTGCAGACAGCGATCTCATCAGGTGCTGAGTACTCGACAATTTCTGTACATA 15307283 Query 111303 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCT 111362 | || | ||||| || || | ||| | ||| || ||||| | ||||| | ||||| Sbjct 15307282 AATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTGCAGGAATCCT 15307223 Query 111363 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT 111422 | | |||||||| || | || || ||| || |||| | ||| || ||| | | Sbjct 15307222 TAAAAAGCATGTATGGGTTACCAGTTTCCACTTGCGATTCTATAATGGCAAACCATAAAG 15307163 Query 111423 CGGCGGCTGGTACAATG-GCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 | |||| | || || || || || ||||| || ||| || || ||||| | Sbjct 15307162 CCTGGGCT--TCCACTGTTCGATTCGCACGTCCTTCTTGCTCATATTTGACATAGAGTTC 15307105 Query 111481 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 111540 |||||| | || ||| | || || || || || | |||||| | | || Sbjct 15307104 TTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGA 15307045 Query 111541 CCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 111600 ||| || | ||||||| || ||||||||||| || |||||||| | | |||| Sbjct 15307044 CCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAA 15306985 Query 111601 GAGATC 111606 ||||| Sbjct 15306984 AAGATC 15306979 Score = 109 bits (120), Expect = 7e-19 Identities = 184/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864 ||| || || ||| | || || |||||||| ||||| | ||||| || | ||| ||||| Sbjct 597188 GTCCTTGCCGCCCGTCAGCCGAGTACCAAACTGACCGCGCGGCTCCAGCAAGTTGATGTT 597247 Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCAC 181923 ||| ||||| |||| | ||||| || |||||||| ||| | | |||| || || | Sbjct 597248 GTTCGAACCAACGTAGTTCTGGGCCAGATTCACGATGGTCATCTGGA-GGGAGACCTCGC 597306 Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCAT 181983 |||||||||| || ||| | ||||| || | | | || ||| |||||||||| || Sbjct 597307 CGTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTCACCTCGC 597366 Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043 ||| ||| | |||||||| |||| || || | ||| ||||| || |||| Sbjct 597367 GCTTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCAT 597426 Query 182044 CCGCCATATGGGCAATAGAGCGCT 182067 || ||| || || ||||||| Sbjct 597427 CCACCAGGCTGGGGATGGAGCGCT 597450 >seq4 Length=20862834 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 122655 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 122714 ||| ||||| || ||| ||||| || || ||||| || || || || |||||| || Sbjct 15862738 CACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTCAG 15862797 Query 122715 ACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 122774 ||| ||||||||||| |||||||||| |||| | || | | || ||| ||||| Sbjct 15862798 ACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCGCTAAAGAA 15862857 Query 122775 GATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 ||| || ||||| |||||| |||| || || ||||| ||| Sbjct 15862858 GATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAG 15862900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031952897600