Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 149 8e-31 >seq4 Length=20862834 Score = 149 bits (164), Expect = 8e-31 Identities = 295/434 (68%), Gaps = 2/434 (0%) Strand=Plus/Plus Query 129742 CTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTT 129801 |||||| |||||||||||||| ||||||| ||| ||||||| |||| || || || Sbjct 15862468 CTTCTCAAAGAAGTTTGTCTTTCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATT 15862527 Query 129802 CTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACTC 129861 ||| | ||| | || ||| || | || || || ||||| | ||| |||| Sbjct 15862528 CTTAGTGTTGTAGATCTTACCCACACCGAGCTCCCCTAGCAGCCGATCGGCCACGAACTC 15862587 Query 129862 AATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAA 129921 ||||||| ||||| | ||||||| || || | || || || || || Sbjct 15862588 GATGTACTGGGACATGAGAACACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGT 15862647 Query 129922 GATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCGTGCC 129981 || |||| ||| ||| || |||||||| |||| | ||| || ||| |||| || Sbjct 15862648 GAGGAACTCCTGCTCGATTTCCACAGCATCCCTGATGATCTCGATGATGCGCTCCC-GCT 15862706 Query 129982 AGGTCTATTGCGCAAAGTCTTGA-AGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGT 130040 || | ||| | | | ||| | | ||| ||||| || ||| ||||| |||| Sbjct 15862707 TGGGCCGCTGCACTAGATGGTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGT 15862766 Query 130041 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 130100 |||||||||| || || || |||||| |||||| ||||||||||| |||||||||| || Sbjct 15862767 CACGGGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCC 15862826 Query 130101 AGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGA 130160 | || |||| ||| ||| |||||||| || ||||| ||| || |||| | Sbjct 15862827 AAAAGATCGAGGCAAAGCTGCCGCTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAA 15862886 Query 130161 GACGCTCAGCAAAG 130174 |||||| |||||| Sbjct 15862887 TACGCTCGGCAAAG 15862900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435153617360