Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 141 1e-28 seq4 105 8e-18 >seq5 Length=28826359 Score = 141 bits (156), Expect = 1e-28 Identities = 590/923 (64%), Gaps = 25/923 (3%) Strand=Plus/Plus Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || ||||| || | |||| | |||||||| ||||| |||||||| | ||||||| | | Sbjct 15306976 CGTGATCTTTTTTACGCTTTATGGATTCCTGATCTTTTCATGAAACGTGTTGAGGCAAAT 15307035 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 | | ||||| | | |||||| | || ||||| || |||| ||| || Sbjct 15307036 GAAAGCTGGTCATTGATGTGTCCACATAAATGTCCTGGCCTTCAAGATGTTTGGGGCGAA 15307095 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA 104875 | ||||||| || || || || ||| ||||||| || |||| | || ||| | Sbjct 15307096 AAATTTGAAGAACTCTATGTCAAATATGAGCAAGAAGGACGTGCGAATCGAACAGTGGAA 15307155 Query 104876 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATG 104935 || | | | ||| || ||| | | || ||| || ||||||| ||||||||| Sbjct 15307156 GCCCAGGCTTTATGGTTTGCCATTATAGAATCGCAAGTGGAAACTGGTAACCCATACATG 15307215 Query 104936 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 104995 |||| || || |||| || |||||| |||||| | ||| | || || || | Sbjct 15307216 CTTTTTAAGGATTCCTGCAATAGAAAGAGCAATCAACAAAATGTTGGCACTATTAAATGC 15307275 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 105055 ||| | ||||||||||| | || | ||| ||||||| ||||| || || Sbjct 15307276 AGTAATTTATGTACAGAAATTGTCGAGTACTCAGCACCTGATGAGATCGCTGTCTGCAAT 15307335 Query 105056 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAA 105115 | || ||||| || || || || || |||| ||| || | ||||| || Sbjct 15307336 TTAGCTTCAATAGCACTGAACATGTTCGTAACAGCAGA---AAAAACGTATGATTTCAAA 15307392 Query 105116 AAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAAT 105175 ||| | | ||||| || |||||||| ||||||| || |||| | |||| || | || Sbjct 15307393 AAATTAAAAGAAGTAACCAAAACTGTTGCCAAAAATCTTAACAAAATTATAGACATCAAC 15307452 Query 105176 TTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCG 105233 | ||| ||| ||| ||| || || || ||| | || || |||||||| ||| | | Sbjct 15307453 TATTA-CCCTTTGCCAGA-AGCCAAGAAGTCCAATTTAAGGCATCGTCCAATCGGTATAG 15307510 Query 105234 GTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAG 105293 || |||| ||||| || || | || ||| | || | | ||| ||| |||| Sbjct 15307511 GTATTCAAGGTCTAGCTGACGCTTTAATTTTAATGCGTTTTCCCTATGAAAGCGAAGAAG 15307570 Query 105294 CGAAGG------AAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 | || ||| ||| | |||||||| || || ||| | ||||| || | Sbjct 15307571 C--CGGTCTTTTAAACCAA----CAAATATTTGAAACAATTTATTTTGGAGCTCTAGAAG 15307624 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | |||| || | || | | ||||||||||||||||| ||| || ||| | Sbjct 15307625 CTAGTTGTGAACTTGCTCAAGCATTTGGTCCATATGAAACCTATGAAGGAAGTCCTGTAA 15307684 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGA--CCAA-GCTTCACTACGACT 105464 |||| | || |||| |||||||||||| | | | |||| | | | || | Sbjct 15307685 GCAAAGGAATTCTACAATATGATATGTGGGA---TAAAACTCCAACGAACCTATGGGATT 15307741 Query 105465 GGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTC 105524 || || || || ||| ||| || || | || || | || | | | || | Sbjct 15307742 GGCAAAGCCTGAAAGAAGACATTAAAAAGCACGGAATTAGGAATTCGTTGTTAGTAGCGC 15307801 Query 105525 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 105584 | ||||| ||||| || || |||||||| |||||||||| |||| || ||||| || | Sbjct 15307802 CGATGCCTACAGCATCTACTGCACAAATTATGGGTAATAACGAATCATTCGAACCATATA 15307861 Query 105585 CGACGAACATCTATCTGAGAAGA 105607 | || || || ||| |||| || Sbjct 15307862 CCACAAATATTTATACGAGACGA 15307884 Score = 113 bits (124), Expect = 5e-20 Identities = 182/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 168458 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 168517 ||||| || ||| | || || |||||||||||||| | |||||| || | ||||| ||| Sbjct 597189 TCCTTGCCGCCCGTCAGCCGAGTACCAAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 597248 Query 168518 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACCG 168577 || ||||| | ||||| | |||| || || || || | ||| ||||| || ||| Sbjct 597249 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATGGTCATCTGGAGGGAGACCTCGCCG 597308 Query 168578 TGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATCC 168637 |||||||| || | |||| || || | | | || ||| ||||| |||| ||| | Sbjct 597309 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTCACCTCGCGC 597368 Query 168638 TTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATCC 168697 ||| || | |||||| | | |||| |||||||| || ||||| || |||||| Sbjct 597369 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCATCC 597428 Query 168698 GCCATGTGTGCGATAGAACGCT 168719 ||| | | ||| || |||| Sbjct 597429 ACCAGGCTGGGGATGGAGCGCT 597450 >seq4 Length=20862834 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 |||||| ||||| | | || |||||| || || || |||||||| || ||| Sbjct 15862900 CTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGAAGGAATCTTCTTTAGCGGCAGCTT 15862841 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 | | || | |||||| |||||||| ||||||||||| ||||| |||||||||||| Sbjct 15862840 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGA 15862781 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 ||| ||||| |||||||| || || ||| || ||||||||| Sbjct 15862780 GCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTTTGCGGTG 15862738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260756255440