Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3 235 2e-56 seq5 185 3e-41 seq1 122 3e-22 >seq3 Length=33007066 Score = 235 bits (260), Expect = 2e-56 Identities = 739/1131 (65%), Gaps = 29/1131 (3%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || ||||| || || || || |||||||| | ||| | || ||| Sbjct 2876181 GCTGTTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAG 2876122 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| || || || ||||| | || || ||||| || ||||| || || Sbjct 2876121 GTCGAGATCATTGCCAACGACCAGGGTAATCGTACGACACCATCCTATGTTGCCTTCACG 2876062 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| ||||||||||| | || || ||||| | || || |||| | Sbjct 2876061 GACACGGAGCGTTTGATTGGTGATGCCGCCAAGAATCAGGTGGCGATGAACCCAACCCAA 2876002 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 ||| | || ||||| ||||| || |||||| | |||||| || | ||| | || Sbjct 2876001 ACGATCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTT----GAGGATTCTGCTGTGCA 2875946 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || || | || || ||| || ||| || || || | || Sbjct 2875945 GTCTGACATGAAGCACTGGCCCTTCGATGTGGTCAGTGTAGATGGC---AAGCCCAAGAT 2875889 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 ||||||| || || | ||| | || || || ||||| || || || || ||||| Sbjct 2875888 TGAGGTTACGTACAAGGATGAGAAGAAGACCTTCTTCCCCGAGGAGATCTCCTCCATGGT 2875829 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 || ||||||||||| | || || || || | || | ||||| | |||| || Sbjct 2875828 GTTGACCAAAATGAAGGAGACCGCCGAGGCGTACCTGGGCAAGACAGTGTCGAATGCCGT 2875769 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 || ||||| |||||||| || || || | |||||| || || || ||||| || | Sbjct 2875768 CATCACTGTGCCAGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGATGCCGGTAC 2875709 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || || ||||| || | || || || || ||||| || || || || || || Sbjct 2875708 CATTGCCGGATTGAATGTGCTGCGTATCATCAACGAGCCCACGGCCGCTGCTATCGCCTA 2875649 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 ||| || || || | | || || || | |||||||| ||| | ||||| || Sbjct 2875648 TGGCCTGGACAAGAAGGCTGTTGGTGAGCGCAACGTGCTTATTTTCGATCTGGGTGGCGG 2875589 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || | || | | || || || || || || || ||| | || || Sbjct 2875588 TACCTTCGATGTGTCCATTCTGTCGATCGATGACGGCATCTTCGAGGTCAAATCTACGGC 2875529 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||||||| ||||||||||| || ||||| || || ||||| || | || ||||| | Sbjct 2875528 CGGTGATACCCATCTTGGTGGTGAGGATTTCGACAACCGTCTAGTGACCCACTTTGTGCA 2875469 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGA---TATTGGAGATAATCCTAGAGCAATGCGTC 349970 || || ||||| ||||| || | || | | | || | | || | |||| Sbjct 2875468 GGAGTTCAAGCG-CAAGCACAAGAAGGACCTGACCAGCAACAAGC---GTGCTCTTCGTC 2875413 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030 | || | || || || || || || |||||| || | || || | ||||| || | Sbjct 2875412 GTCTGCGCACCGCCTGCGAGCGCGCAAAGCGTACCCTCTCGTCGTCCACCCAGGCCAGCA 2875353 Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090 |||| ||||| ||||| || || | ||||||| | || || || ||||| || | Sbjct 2875352 TTGAGATTGACTCTCTGTTCGAGGGTACCGATTTCTACACCTCGATCACTCGTGCCCGTT 2875293 Query 350091 TTGAAGAATTATGTATG--GATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAGTAT 350147 | || || || | | ||||| || | ||| || ||||| || ||||| || | Sbjct 2875292 TCGAGGA--GCTGAACGCCGATCTGTTCCGCAGC-ACCATGGACCCCGTGGAGAAGGCTC 2875236 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAG--ATTGATGAAGTAGTTTTAGTTGGTGGTTC 350205 | || || || || | || || | || | || | || || || ||||| || Sbjct 2875235 TGCGTGACGCCAAGCTG--GACAAGTCGGTCATCCACGACATTGTGTTGGTCGGTGGCTC 2875178 Query 350206 TACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTC 350265 ||| ||||| || || || || | | || || | || || ||||| || | Sbjct 2875177 TACCCGTATCCCCAAGGTGCAGCGCCTGCTCCAGGATCTGTTCAACGGCAAGGAGCTGAA 2875118 Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | || || ||||| ||||| |||||||| |||||||| ||||| ||||| Sbjct 2875117 CAAGTCGATCAATCCCGATGAGGCTGTTGCCTATGGTGCCGCTGTCCAGGC 2875067 >seq5 Length=28826359 Score = 185 bits (204), Expect = 3e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | ||| | || ||||| || ||||| ||||||||||| Sbjct 15755891 CCACCACGAAGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGAC 15755950 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | |||||| |||||||| | ||| || ||||| ||||| | ||| || ||||| |||||| Sbjct 15755951 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 15756010 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 ||||||||||| ||||| || || ||||| ||||| || || | ||| || ||||| || Sbjct 15756011 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACC 15756070 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || ||||| || |||||||| |||||||| Sbjct 15756071 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117 Score = 134 bits (148), Expect = 4e-26 Identities = 294/435 (68%), Gaps = 8/435 (2%) Strand=Plus/Minus Query 204909 ACATAAATTACTAGACTTAATAGTACCAAGGTTTTGTTGATTTGTTTTATAATTAACAGC 204968 |||||||||||| | |||||||| |||| ||||||||||| | || ||| | Sbjct 15307287 ACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTGCAGGA 15307228 Query 204969 ATCTTTATATAACATATATGGTGTACCTGTTTCCATTTGCGAATCTAAAATTTTGATCCA 205028 ||| ||| | | ||| ||||| |||| ||||||| |||||| |||| ||| | ||| Sbjct 15307227 ATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGCGATTCTATAATGGCAAACCA 15307168 Query 205029 TAAATCACGAGCattaa---tttgtttagtaaataaattttttgattcatatttgagata 205085 |||| | | || | | || | || | | | || ||| | ||||||||| ||| Sbjct 15307167 TAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCC--TTCTTGCT-CATATTTGACATA 15307111 Query 205086 taattttttataattatCTCCATAA-CATTCTGATAATCCAGGTGTTCTATCTGGACAAA 205144 | || || | | || || || || ||| ||| | ||||| | ||| |||||| | Sbjct 15307110 GAGTTCTTCAAATTTTTCGCCCCAAACATCTTGA-AGGCCAGGACATTTATGTGGACACA 15307052 Query 205145 ATAATGACCATTTGCTATTAGTATGTACTCTTTCCATAAACAGATCTGAAATCCAAAGAG 205204 |||||||| | ||| | | || | || ||| || ||||| | |||||| | || Sbjct 15307051 TCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAAAG 15306992 Query 205205 CATAAAAAAGGTCACGAGCGCGAAGTTCTTCGTCTCCATGATTTTTCTTTAAATCTAAAA 205264 | |||||||| ||||| || || |||||| | |||| ||| | || | ||||||| Sbjct 15306991 CGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAA 15306932 Query 205265 ATTCTTCAATATCCGGATGATGTGGTTCAATATACATAGCAAAACTTCCAGCTCTTTTTC 205324 | || || ||| | ||| || || | ||| |||||||| |||| |||||||| Sbjct 15306931 ACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTC 15306872 Query 205325 CACCACCATTATGAA 205339 |||| || | || || Sbjct 15306871 CACCTCCCTGATCAA 15306857 Score = 93.3 bits (102), Expect = 1e-13 Identities = 289/441 (66%), Gaps = 10/441 (2%) Strand=Plus/Minus Query 202369 GGTTTTCTGCGTAGATAATATATTCCAGTTTTTAGTCCTTGTTTCCAACTATAAAAATGC 202428 |||||| |||||| ||| || ||||| ||||||||||| |||||| ||||||| Sbjct 15308228 GGTTTTGTGCGTAAATAGTACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGT 15308169 Query 202429 ATATTTGTTAATGATTTTGCAGTT-GGATCTTCCATCCAAAGATTTAAACTTTGCGATTG 202487 || ||| ||| || | |||| || ||| | | || ||| || || ||| Sbjct 15308168 ATGGATGTCAAT-TTTCCGTAGTTGGGCTCTGCTACGTGAACATTAAACGACTGACTTTG 15308110 Query 202488 ACAAATATAAGCTCCTCTATCTCTAGACATATCTAT--AAGATTTTTCATTGGTATCTCC 202545 | |||| | || |||||||| || ||| | || |||||| | || || ||| Sbjct 15308109 ATCAATAAATGCACCTCTATCAGCAGCCATTTTAATTGTGGATTTT--ACTGAAATTTCC 15308052 Query 202546 CAAACAATTTTATATTTTTCTTTTAGTCGTTTT--GGTATAGTGTCGATATATTGAATAC 202603 || ||| ||||||| || | | |||| || ||||| || |||| |||||| Sbjct 15308051 CATACAGTTTTATAAAGATCGCGAA--CCTTTTGGGGAATAGTTTCAATATCTTGAATGG 15307994 Query 202604 TACCTTTATTCTGAATTATATTGTTTTTAATTGAATCATCCCAAATACCTAAATTAATAA 202663 || | | |||||| || ||||| || ||||||||| | | || | | | Sbjct 15307993 AGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCATCCCATAAGTCCAACTCTGTTA 15307934 Query 202664 GATCATTAATTAAATATTTATTAACAATAATAAACTCACCAGCTAGTGTTCTTCTTGAAT 202723 ||| | | ||||| | ||| || | ||| ||||||| || | || ||| | || Sbjct 15307933 AATCCCTCAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTAT 15307874 Query 202724 AAATATTACTTGTAAATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTACTAG 202783 ||||||| | ||| ||||||| || |||| |||||||| | |||||| ||| | Sbjct 15307873 AAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGATG 15307814 Query 202784 CAGTTGGCATAGGTGCAACTA 202804 | || ||||| || || |||| Sbjct 15307813 CTGTAGGCATCGGCGCTACTA 15307793 >seq1 Length=22123056 Score = 122 bits (134), Expect = 3e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || | ||| ||||| || || || || || || || || || || || || || | Sbjct 6630561 CAAG-TGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCA 6630503 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || || ||||| | ||| |||||||| || ||||| || || || ||||| | Sbjct 6630502 GCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6630443 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | ||||| || ||||| || || | || || || ||||| || || || | ||||| | Sbjct 6630442 TCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGC 6630383 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || ||||| || |||||||||||| Sbjct 6630382 CAGTCAGGGTTTTCACGAAAATCTGCATT 6630354 Score = 111 bits (122), Expect = 5e-19 Identities = 197/287 (69%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || | ||||| | | || |||||||||| || ||||| ||| | Sbjct 7407714 CCCGAGGAGATCTCTGCCATGGTCCTCGGCAAGATGAAGGAAACCGCCGAAGCTTATCTG 7407773 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || | || || | || || || ||||| || || |||||||||||| Sbjct 7407774 GGCAAGAAGGTCACCCACGCCGTGGTCACAGTGCCGGCCTACTTCAACGATGCCCAGCGT 7407833 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||||||| |||||| || | |||||| | | || || || ||| Sbjct 7407834 CAAGCCACCAAGGATGCTGGCGTCATTGCCGGTCTCAATGTTATGCGCATTATCAACGAA 7407893 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || |||||||| || ||||| || || || |||||| || || || || || | Sbjct 7407894 CCGACTGCTGCGGCCATTGCCTACGGTCTGGATAAA---AGGGAGGGCGAGAAGAACGTG 7407950 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818 || | || ||| | || || ||||| || ||||| || || || || Sbjct 7407951 CTGGTGTTCGATCTGGGCGGCGGTACCTTCGATGTCTCCCTGCTGAC 7407997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254283514818