Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq3 235 2e-56
seq5 185 3e-41
seq1 122 3e-22
>seq3
Length=33007066
Score = 235 bits (260), Expect = 2e-56
Identities = 739/1131 (65%), Gaps = 29/1131 (3%)
Strand=Plus/Minus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
||| | || || ||||| || || || || |||||||| | ||| | || |||
Sbjct 2876181 GCTGTTGGTATTGATTTGGGCACAACCTACTCTTGTGTGGGTGTGTTCCAGCATGGCAAG 2876122
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
|| || || ||||| || || || ||||| | || || ||||| || ||||| || ||
Sbjct 2876121 GTCGAGATCATTGCCAACGACCAGGGTAATCGTACGACACCATCCTATGTTGCCTTCACG 2876062
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || |||||| ||||||||||| | || || ||||| | || || |||| |
Sbjct 2876061 GACACGGAGCGTTTGATTGGTGATGCCGCCAAGAATCAGGTGGCGATGAACCCAACCCAA 2876002
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434
||| | || ||||| ||||| || |||||| | |||||| || | ||| | ||
Sbjct 2876001 ACGATCTTCGATGCCAAGCGTCTGATTGGTCGCAAGTTT----GAGGATTCTGCTGTGCA 2875946
Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494
||||| | || || | || || ||| || ||| || || || | ||
Sbjct 2875945 GTCTGACATGAAGCACTGGCCCTTCGATGTGGTCAGTGTAGATGGC---AAGCCCAAGAT 2875889
Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554
||||||| || || | ||| | || || || ||||| || || || || |||||
Sbjct 2875888 TGAGGTTACGTACAAGGATGAGAAGAAGACCTTCTTCCCCGAGGAGATCTCCTCCATGGT 2875829
Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614
|| ||||||||||| | || || || || | || | ||||| | |||| ||
Sbjct 2875828 GTTGACCAAAATGAAGGAGACCGCCGAGGCGTACCTGGGCAAGACAGTGTCGAATGCCGT 2875769
Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674
|| ||||| |||||||| || || || | |||||| || || || ||||| || |
Sbjct 2875768 CATCACTGTGCCAGCCTACTTCAACGACTCTCAGCGTCAGGCGACCAAGGATGCCGGTAC 2875709
Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734
|||||| || || ||||| || | || || || || ||||| || || || || || ||
Sbjct 2875708 CATTGCCGGATTGAATGTGCTGCGTATCATCAACGAGCCCACGGCCGCTGCTATCGCCTA 2875649
Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794
||| || || || | | || || || | |||||||| ||| | ||||| ||
Sbjct 2875648 TGGCCTGGACAAGAAGGCTGTTGGTGAGCGCAACGTGCTTATTTTCGATCTGGGTGGCGG 2875589
Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854
||| || ||||| || | || | | || || || || || || || ||| | || ||
Sbjct 2875588 TACCTTCGATGTGTCCATTCTGTCGATCGATGACGGCATCTTCGAGGTCAAATCTACGGC 2875529
Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914
|||||||| ||||||||||| || ||||| || || ||||| || | || ||||| |
Sbjct 2875528 CGGTGATACCCATCTTGGTGGTGAGGATTTCGACAACCGTCTAGTGACCCACTTTGTGCA 2875469
Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGA---TATTGGAGATAATCCTAGAGCAATGCGTC 349970
|| || ||||| ||||| || | || | | | || | | || | ||||
Sbjct 2875468 GGAGTTCAAGCG-CAAGCACAAGAAGGACCTGACCAGCAACAAGC---GTGCTCTTCGTC 2875413
Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030
| || | || || || || || || |||||| || | || || | ||||| || |
Sbjct 2875412 GTCTGCGCACCGCCTGCGAGCGCGCAAAGCGTACCCTCTCGTCGTCCACCCAGGCCAGCA 2875353
Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090
|||| ||||| ||||| || || | ||||||| | || || || ||||| || |
Sbjct 2875352 TTGAGATTGACTCTCTGTTCGAGGGTACCGATTTCTACACCTCGATCACTCGTGCCCGTT 2875293
Query 350091 TTGAAGAATTATGTATG--GATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAGTAT 350147
| || || || | | ||||| || | ||| || ||||| || ||||| || |
Sbjct 2875292 TCGAGGA--GCTGAACGCCGATCTGTTCCGCAGC-ACCATGGACCCCGTGGAGAAGGCTC 2875236
Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAG--ATTGATGAAGTAGTTTTAGTTGGTGGTTC 350205
| || || || || | || || | || | || | || || || ||||| ||
Sbjct 2875235 TGCGTGACGCCAAGCTG--GACAAGTCGGTCATCCACGACATTGTGTTGGTCGGTGGCTC 2875178
Query 350206 TACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTC 350265
||| ||||| || || || || | | || || | || || ||||| || |
Sbjct 2875177 TACCCGTATCCCCAAGGTGCAGCGCCTGCTCCAGGATCTGTTCAACGGCAAGGAGCTGAA 2875118
Query 350266 TAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316
| || || ||||| ||||| |||||||| |||||||| ||||| |||||
Sbjct 2875117 CAAGTCGATCAATCCCGATGAGGCTGTTGCCTATGGTGCCGCTGTCCAGGC 2875067
>seq5
Length=28826359
Score = 185 bits (204), Expect = 3e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||| | | || || | ||| | || ||||| || ||||| |||||||||||
Sbjct 15755891 CCACCACGAAGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGAC 15755950
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| |||||| |||||||| | ||| || ||||| ||||| | ||| || ||||| ||||||
Sbjct 15755951 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 15756010
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690
||||||||||| ||||| || || ||||| ||||| || || | ||| || ||||| ||
Sbjct 15756011 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACC 15756070
Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || ||||| || |||||||| ||||||||
Sbjct 15756071 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117
Score = 134 bits (148), Expect = 4e-26
Identities = 294/435 (68%), Gaps = 8/435 (2%)
Strand=Plus/Minus
Query 204909 ACATAAATTACTAGACTTAATAGTACCAAGGTTTTGTTGATTTGTTTTATAATTAACAGC 204968
|||||||||||| | |||||||| |||| ||||||||||| | || ||| |
Sbjct 15307287 ACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTGCAGGA 15307228
Query 204969 ATCTTTATATAACATATATGGTGTACCTGTTTCCATTTGCGAATCTAAAATTTTGATCCA 205028
||| ||| | | ||| ||||| |||| ||||||| |||||| |||| ||| | |||
Sbjct 15307227 ATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTGCGATTCTATAATGGCAAACCA 15307168
Query 205029 TAAATCACGAGCattaa---tttgtttagtaaataaattttttgattcatatttgagata 205085
|||| | | || | | || | || | | | || ||| | ||||||||| |||
Sbjct 15307167 TAAAGCCTGGGCTTCCACTGTTCGATTCGCACGTCC--TTCTTGCT-CATATTTGACATA 15307111
Query 205086 taattttttataattatCTCCATAA-CATTCTGATAATCCAGGTGTTCTATCTGGACAAA 205144
| || || | | || || || || ||| ||| | ||||| | ||| |||||| |
Sbjct 15307110 GAGTTCTTCAAATTTTTCGCCCCAAACATCTTGA-AGGCCAGGACATTTATGTGGACACA 15307052
Query 205145 ATAATGACCATTTGCTATTAGTATGTACTCTTTCCATAAACAGATCTGAAATCCAAAGAG 205204
|||||||| | ||| | | || | || ||| || ||||| | |||||| | ||
Sbjct 15307051 TCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAAAG 15306992
Query 205205 CATAAAAAAGGTCACGAGCGCGAAGTTCTTCGTCTCCATGATTTTTCTTTAAATCTAAAA 205264
| |||||||| ||||| || || |||||| | |||| ||| | || | |||||||
Sbjct 15306991 CGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAA 15306932
Query 205265 ATTCTTCAATATCCGGATGATGTGGTTCAATATACATAGCAAAACTTCCAGCTCTTTTTC 205324
| || || ||| | ||| || || | ||| |||||||| |||| ||||||||
Sbjct 15306931 ACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTC 15306872
Query 205325 CACCACCATTATGAA 205339
|||| || | || ||
Sbjct 15306871 CACCTCCCTGATCAA 15306857
Score = 93.3 bits (102), Expect = 1e-13
Identities = 289/441 (66%), Gaps = 10/441 (2%)
Strand=Plus/Minus
Query 202369 GGTTTTCTGCGTAGATAATATATTCCAGTTTTTAGTCCTTGTTTCCAACTATAAAAATGC 202428
|||||| |||||| ||| || ||||| ||||||||||| |||||| |||||||
Sbjct 15308228 GGTTTTGTGCGTAAATAGTACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGT 15308169
Query 202429 ATATTTGTTAATGATTTTGCAGTT-GGATCTTCCATCCAAAGATTTAAACTTTGCGATTG 202487
|| ||| ||| || | |||| || ||| | | || ||| || || |||
Sbjct 15308168 ATGGATGTCAAT-TTTCCGTAGTTGGGCTCTGCTACGTGAACATTAAACGACTGACTTTG 15308110
Query 202488 ACAAATATAAGCTCCTCTATCTCTAGACATATCTAT--AAGATTTTTCATTGGTATCTCC 202545
| |||| | || |||||||| || ||| | || |||||| | || || |||
Sbjct 15308109 ATCAATAAATGCACCTCTATCAGCAGCCATTTTAATTGTGGATTTT--ACTGAAATTTCC 15308052
Query 202546 CAAACAATTTTATATTTTTCTTTTAGTCGTTTT--GGTATAGTGTCGATATATTGAATAC 202603
|| ||| ||||||| || | | |||| || ||||| || |||| ||||||
Sbjct 15308051 CATACAGTTTTATAAAGATCGCGAA--CCTTTTGGGGAATAGTTTCAATATCTTGAATGG 15307994
Query 202604 TACCTTTATTCTGAATTATATTGTTTTTAATTGAATCATCCCAAATACCTAAATTAATAA 202663
|| | | |||||| || ||||| || ||||||||| | | || | | |
Sbjct 15307993 AGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCATCCCATAAGTCCAACTCTGTTA 15307934
Query 202664 GATCATTAATTAAATATTTATTAACAATAATAAACTCACCAGCTAGTGTTCTTCTTGAAT 202723
||| | | ||||| | ||| || | ||| ||||||| || | || ||| | ||
Sbjct 15307933 AATCCCTCAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTAT 15307874
Query 202724 AAATATTACTTGTAAATGGTTCAAAACATTCATTATTACCTAAAATTTGACTGGTACTAG 202783
||||||| | ||| ||||||| || |||| |||||||| | |||||| ||| |
Sbjct 15307873 AAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGATG 15307814
Query 202784 CAGTTGGCATAGGTGCAACTA 202804
| || ||||| || || ||||
Sbjct 15307813 CTGTAGGCATCGGCGCTACTA 15307793
>seq1
Length=22123056
Score = 122 bits (134), Expect = 3e-22
Identities = 153/209 (73%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589
|||| || | ||| ||||| || || || || || || || || || || || || || |
Sbjct 6630561 CAAG-TGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCA 6630503
Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649
| || || || || ||||| | ||| |||||||| || ||||| || || || ||||| |
Sbjct 6630502 GCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6630443
Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709
| ||||| || ||||| || || | || || || ||||| || || || | ||||| |
Sbjct 6630442 TCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGC 6630383
Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738
| || || ||||| || ||||||||||||
Sbjct 6630382 CAGTCAGGGTTTTCACGAAAATCTGCATT 6630354
Score = 111 bits (122), Expect = 5e-19
Identities = 197/287 (69%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| || || || | ||||| | | || |||||||||| || ||||| ||| |
Sbjct 7407714 CCCGAGGAGATCTCTGCCATGGTCCTCGGCAAGATGAAGGAAACCGCCGAAGCTTATCTG 7407773
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| | | || || | || || | || || || ||||| || || ||||||||||||
Sbjct 7407774 GGCAAGAAGGTCACCCACGCCGTGGTCACAGTGCCGGCCTACTTCAACGATGCCCAGCGT 7407833
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || ||||||||| |||||| || | |||||| | | || || || |||
Sbjct 7407834 CAAGCCACCAAGGATGCTGGCGTCATTGCCGGTCTCAATGTTATGCGCATTATCAACGAA 7407893
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| |||||||| || ||||| || || || |||||| || || || || || |
Sbjct 7407894 CCGACTGCTGCGGCCATTGCCTACGGTCTGGATAAA---AGGGAGGGCGAGAAGAACGTG 7407950
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818
|| | || ||| | || || ||||| || ||||| || || || ||
Sbjct 7407951 CTGGTGTTCGATCTGGGCGGCGGTACCTTCGATGTCTCCCTGCTGAC 7407997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515254283514818
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