Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 >seq4 Length=20862834 Score = 107 bits (118), Expect = 2e-18 Identities = 339/520 (65%), Gaps = 13/520 (3%) Strand=Plus/Minus Query 59893 TGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 ||||| ||| || ||||| || || || || | || || || ||||||||| | Sbjct 15862982 TGTTCAATGCTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCT 15862923 Query 59953 GGATGAGTCCTGGA-----GCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGA 60007 |||| |||| || || ||||| | ||| | || || ||||| |||||| Sbjct 15862922 GGATA--TCCTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGA 15862865 Query 60008 AGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCAT 60067 |||||||||||| ||| || | || || ||||| || |||||||| ||||| Sbjct 15862864 AGGAATCTTCTTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCAT 15862805 Query 60068 GCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTT 60127 ||| || |||| ||||||||||||||||| ||||| ||||| || || || || || Sbjct 15862804 GCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTT 15862745 Query 60128 TGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCC--AAGGATATTCACAAG 60185 ||| ||| | ||| || ||| || | |||| | || || | || Sbjct 15862744 TGCGGTGCTCATGTATCACCATCTAGTG--CAGCGGCCCAAGCGGGAGCGCATCATCGAG 15862687 Query 60186 ATTGTTCAGTG-GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAA 60244 | | |||| | ||| ||| | ||| |||||| |||| ||||| || || ||| Sbjct 15862686 A-TCATCAGGGATGCTGTGGAAATCGAGCAGGAGTTCCTCACTGAAGCCCTGCCCGTCAA 15862628 Query 60245 ACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCT 60304 | || || ||| || || ||| | |||||||| |||| || || || || || Sbjct 15862627 TTTGATTGGCATGAACTGTGTTCTCATGTCCCAGTACATCGAGTTCGTGGCCGATCGGCT 15862568 Query 60305 CATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGA 60364 | | || | || | || || ||| | || || |||||| | | ||||| Sbjct 15862567 GCTAGGGGAGCTCGGTGTGGGTAAGATCTACAACACTAAGAATCCTTTCAATTTCATGGA 15862508 Query 60365 GACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 || |||||| |||| || ||||| ||||||||||||||| Sbjct 15862507 GATGATCTCGCTGGACGGAAAGACAAACTTCTTTGAGAAG 15862468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524758860640