Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-37 seq4 91.5 2e-13 >seq5 Length=28826359 Score = 170 bits (188), Expect = 2e-37 Identities = 307/449 (68%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| ||||| ||||| || || |||| ||||| |||||| | || || | || || Sbjct 597009 CCAGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACCAC 597068 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| | | | | || ||||| || ||||| |||| || || ||| ||| Sbjct 597069 AATGGCTCGATCCTCTGGCCATCGTCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGGGA 597128 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | ||| ||| ||| | | | |||||||||||||||| ||| ||| Sbjct 597129 TGGTAGATGAGGCGCGTCAGCGGCGACATCAGTGTGAAAATGTAACGAGCGCTGGCACAG 597188 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 |||||||| || | || || ||||| || || || | |||||||| | ||| | |||| Sbjct 597189 TCCTTGCCGCCCGTCAGCCGAGTACCAAACTGACCGCGCGGCTCCAGCAAGTTGATGTTG 597248 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 || | || || |||| || |||| || || || || |||||| |||| || Sbjct 597249 TTCGAACCAACGTAGTTCTGGGCCAGATTCACGATGGTCATCTGGAGGGAGACCTCGCCG 597308 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511 ||||| || |||| | |||||||||| |||| | |||||| |||||||||| || | Sbjct 597309 TGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTCACCTCGCGC 597368 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | ||| ||||| ||| | | || ||||||||||| | |||||||| |||||| Sbjct 597369 TTGTCGTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCATCC 597428 Query 117572 GCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||| | ||||| || |||| | |||| Sbjct 597429 ACCAGGCTGGGGATGGAGCGCTCGTTGTC 597457 Score = 140 bits (154), Expect = 4e-28 Identities = 305/453 (67%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || ||||||||||| || ||||| ||||||| |||||| | || || || Sbjct 597007 ATCCAGTGCCGATGCCCTCGGCTCCGTTCACCAGAACCATCGGTATGATGGGCAGATACC 597066 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 || ||||| | | || || || || || ||| | || | | || ||| | Sbjct 597067 ACAATGGCTCGATCCTCTGGCCATCGTCGGTCTGGTACTCCAGCAGCGGATCGTCCAGGG 597126 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 ||| | | || | || |||| || || | ||||| ||||| || | |||||| Sbjct 597127 GATGGTAGATGAGGCGCGTCAGCGGCGACATCAGTGTGAAAATGTAACGAGCGCTGGCAC 597186 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 |||||||| || | |||||| || |||||||| || ||||| || | ||||| || Sbjct 597187 AGTCCTTGCCGCCCGTCAGCCGAGTACCAAACTGACCGCGCGGCTCCAGCAAGTTGATGT 597246 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 |||| | || ||| | ||||| |||| |||||| || || ||| || | || | Sbjct 597247 TGTTCGAACCAACGTAGTTCTGGGCCAGATTCACGATGGTCATCTGGAGGGAGACCTCGC 597306 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-C 152232 ||||||| || |||| | |||||| | | | || | || ||| |||||||||| || | Sbjct 597307 CGTGGTGGTAGGCCGACATCTCCGCCACGGAGCCAGACAGCTGGGCCACCTTCACCTCGC 597366 Query 152233 G-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | | ||| ||| ||||| || | | | || |||||||||||| || |||| || Sbjct 597367 GCTTGTC--GTTGCGCTTGAAGCAAGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCC 597424 Query 152292 GTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||||| | || || || |||| | |||| Sbjct 597425 ATCCACCAGGCTGGGGATGGAGCGCTCGTTGTC 597457 Score = 109 bits (120), Expect = 6e-19 Identities = 263/396 (66%), Gaps = 9/396 (2%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| ||| | | ||||| | || ||||||||||| || ||||| Sbjct 597892 CAGCTCCGGCCAGTTGGTGTGCACAAAGTTGATCAGCAGACCCTTGATGTGGGAGCCGTC 597951 Query 152802 AAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAG----GTCACGTAGTGACC 152857 ||||| || ||||||||||||| ||||||||||| ||| || || | Sbjct 597952 CTGATCCTGATCCGTCATGATCATCACCTTGCCGTAGCGCAGCGTCTTCAGGTCGTCCTC 598011 Query 152858 CGT---AGACCTTTCC--ATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTC 152912 || | || ||| | || || || |||| |||||| || ||| | || | Sbjct 598012 GGTCAGATACTTTTTCTTATACTGGAGGCCGATGATCTTGCACAGATTGTTGATCTCGGC 598071 Query 152913 ATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGG 152972 || || | || |||||| | | || || || |||||| || |||| || || ||||| Sbjct 598072 GTTCTCAGACAGCTGTTTGAAGTTTGCCTCGCGCACATTGAGCAGCTTGCCGCGCAGTGG 598131 Query 152973 AAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGC 153032 ||||| ||| | |||||| || | |||| ||| || | | || || | || || Sbjct 598132 GAACACCCCGTAGTAGTTGCGCCCAATCACGCCCAGGCCAGAGACGGCCAGCGACTTGGC 598191 Query 153033 CGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTT 153092 |||||| |||||||| | || || || || | | || | |||||| ||| Sbjct 598192 CGAGTCTCCCTCGGTCAGGATGAGGGTGCAATTGATCGAGTTCTTGCCGCCGGCCTCGTT 598251 Query 153093 GGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCT 153128 ||| || || |||||||| || ||| ||||| |||| Sbjct 598252 GGCATCCTCCAGCTTGGGTATGCCCTTGATCTTGCT 598287 Score = 109 bits (120), Expect = 6e-19 Identities = 219/319 (69%), Gaps = 17/319 (5%) Strand=Plus/Minus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGG 158998 ||| |||||| || | |||||||||||||| || ||||||||| ||||| ||| | | Sbjct 5284275 CAACAAACTCACGTACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGCTGT 5284216 Query 158999 GCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCGCGC 159057 | || | ||| | |||||| ||||| ||||| || ||| ||||| ||||| || ||| Sbjct 5284215 CACGCTGCAACATCATCCACATTGCCTCCACGTAGTCACTG-GCGTGGCCCCAATCCCGC 5284157 Query 159058 TTGGCATCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCA-------CTCAGC 159110 || | ||| | ||| |||||||| | | | |||| | || | || || || Sbjct 5284156 TTCGAATCTAAGTTTCCGAGCTCAA--AGTATTCC--ATTTGGTTCAGGAGAATCTTTGC 5284101 Query 159111 CAGACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA--CTCATGG 159168 || | |||| ||||| | || ||||| | ||||||||| || || ||| ||| Sbjct 5284100 CACGCTTCGCGTTATCTTTCTGGTAACAAAATTCTCTCCGCGCC--TCGGACTCTCGTGG 5284043 Query 159169 TTAAACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATC 159228 ||||| || || || | || ||| ||| || |||| ||| | ||| || | |||| Sbjct 5284042 TTAAAGAGGATTCCATTGCAGGCGTACATATTGTAGGCCTCCCTGTAGTTGATGACTATC 5283983 Query 159229 CAGTATCCAAAGAGCTTGG 159247 || | ||| | | ||||| Sbjct 5283982 CAAAAACCATACATCTTGG 5283964 Score = 89.7 bits (98), Expect = 6e-13 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 124486 CCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCT--TCGGG 124543 |||| | ||||||||| | ||||||||||| || ||| ||||||| | || | || Sbjct 5284278 CCTCAACAAACTCACGTACACTGTGCGTCTCTCCGGTGGCAATCACATAGTCCGATGGGC 5284219 Query 124544 AATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTC 124603 || || |||||||||| | |||||| || | |||||||| ||||| ||||| || Sbjct 5284218 TGTC-AC-GCTGCAACATCATCCACATTGCCTCCACGTAGTCACTGGCGTGGCCCCAATC 5284161 Query 124604 GCGCTTGGCATCCAGGTTTCCGAGCTC 124630 ||||| | ||| | |||||||||||| Sbjct 5284160 CCGCTTCGAATCTAAGTTTCCGAGCTC 5284134 >seq4 Length=20862834 Score = 91.5 bits (100), Expect = 2e-13 Identities = 314/488 (64%), Gaps = 9/488 (2%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT- 74842 |||| || || || || | || || ||||| || ||||||||||||| ||||||||| Sbjct 15862775 ATCAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATC 15862834 Query 74843 --GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGT 74900 |||| || | || || |||||||| ||||| || ||||||||| | || || Sbjct 15862835 GAGGCAAAGCTG---CCGCTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGC 15862891 Query 74901 TGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTG 74957 | || || || | || | ||||| | | ||||| || || || || || Sbjct 15862892 TCGGCAAAGTTGGCCGATTTCGAGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTT 15862951 Query 74958 ACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG 75017 || || || | || || || || | ||| | | | ||| | || ||| | | Sbjct 15862952 ACAGCCGGCATGGTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGTATG 15863011 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077 ||||||| | | |||| |||| || || | ||| || |||| | Sbjct 15863012 TAGGTGTCAATGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAG 15863071 Query 75078 GCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTC 75137 ||||||| | || ||||| | ||||| || |||| ||| | | | | |||| Sbjct 15863072 CCGTAGAAGCAACGTGCCTCCGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTC 15863131 Query 75138 TCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGC 75197 || | || |||||||||||||| ||||| || || || || |||||||| |||| Sbjct 15863132 TCGTTAACAATGCCGTCCGAGGCAGCGAAGAAGGCTAGCACATGGGAGATAAAGTAGCGC 15863191 Query 75198 TCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACC 75257 || | ||||||||| | |||| ||| || |||| || | ||| | ||| || || Sbjct 15863192 TCGTTGTCAGTGAGACGGGCCCAGTCCGTCGCGTCCTTCGATAGATCCACCTCTTCCACG 15863251 Query 75258 GTCCAGAA 75265 |||||||| Sbjct 15863252 GTCCAGAA 15863259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215958958800