Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 196 5e-45 seq2 163 3e-35 seq1 150 2e-31 seq4 86.0 7e-12 >seq5 Length=28826359 Score = 196 bits (216), Expect = 5e-45 Identities = 311/444 (70%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| ||||| || | ||| ||| ||||| ||||| ||||||||||| || | | Sbjct 597450 AGCGCTCCATCCCCAGCCTGGTGGATGGCCTGAAGCCCGGCCAGCGCAAGGTCATGTTCA 597391 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 | ||| ||||| ||| | | || |||||||||| |||||||| |||| ||||| Sbjct 597390 CTTGCTTCAAGCGCAACGACAAGCGCGAGGTGAAGGTGGCCCAGCTGTCTGGCTCCGTGG 597331 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||| ||||||| ||||||||||||| || |||||| ||||| || || || | Sbjct 597330 CGGAGATGTCGGCCTACCACCACGGCGAGGTCTCCCTCCAGATGACCATCGTGAATCTGG 597271 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | ||||||| || ||| | || ||| | ||||| || ||||| || |||||||| | Sbjct 597270 CCCAGAACTACGTTGGTTCGAACAACATCAACTTGCTGGAGCCGCGCGGTCAGTTTGGTA 597211 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCC--GTCTCGC 32258 | ||||| | || |||||||| ||| ||| | |||||||| ||||| | | |||| Sbjct 597210 CTCGGCTGACGGGCGGCAAGGACTGTGCCAGCGCTCGTTACATTTTCACACTGATGTCGC 597151 Query 32259 ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGA 32318 || ||||||| || | | | || ||||||| || |||| ||||| | || Sbjct 597150 CGCT--GACGCGCCTCATCTACCATCCCCTGGACGATCCGCTGCTGGAGTACCAGACCGA 597093 Query 32319 TGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAA 32378 || || ||| || ||||||| ||| || || | | |||||| | ||||||| Sbjct 597092 CGATGGCCAGAGGATCGAGCCATTGTGGTATCTGCCCATCATACCGATGGTTCTGGTGAA 597033 Query 32379 CGGTGCAGAAGGCATCGGAACGGG 32402 ||| || || |||||||| || || Sbjct 597032 CGGAGCCGAGGGCATCGGCACTGG 597009 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| || | Sbjct 15756117 ATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCTTCG 15756058 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || || || || |||||||| || |||||||||||||| || Sbjct 15756057 GATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAA 15755998 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||| |||||| | || |||| || || || | || ||||| Sbjct 15755997 CAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTATAAC 15755938 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| ||||| | ||| |||| | || ||||| |||||| Sbjct 15755937 ATTCAGAAGGAGTCCACCTTGCATTTAGTACTTCGGCTTCGTGGTGGA 15755890 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || || |||||||| || || | ||||| ||| | Sbjct 28457680 AATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTC 28457621 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| || Sbjct 28457620 TGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 28457561 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || |||||||| || ||||||| || || || | ||||| || Sbjct 28457560 GCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 28457501 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | || || |||||||| Sbjct 28457500 CATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGG 28457453 >seq2 Length=30136903 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || ||||| || || || || || ||||| ||| || Sbjct 19092550 ATGCAGATATTCGTGAAGACTCTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCC 19092491 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||||||||| || ||||||||| Sbjct 19092490 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 19092431 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || || || | ||||| || Sbjct 19092430 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAAC 19092371 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || ||||| ||| | || ||||||| || || ||| Sbjct 19092370 ATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGTCTCCGTGGCGGA 19092323 Score = 161 bits (178), Expect = 1e-34 Identities = 180/239 (75%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 27394 AATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAG 27453 |||| ||| | |||||| |||||||| || || | || || || || || || || ||| Sbjct 19092789 AATAATACAA-AATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAG 19092731 Query 27454 GTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATT 27513 || ||| || || | ||||| || ||||||| || || ||||||||||||||||| Sbjct 19092730 GTGGAGCCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATC 19092671 Query 27514 CCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTA 27573 || || |||||||||||||| || || || || ||||| || ||||||| || || || Sbjct 19092670 CCCCCTGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTT 19092611 Query 27574 GCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || |||| ||||| || ||||| ||| | || ||||||| |||||||| Sbjct 19092610 TCGGACTACAACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGTCTCCGCGGTGG 19092552 >seq1 Length=22123056 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || || || |||||||| || || || ||||||||| | Sbjct 6630354 AATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCTC 6630413 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | |||||||| || |||||||||||||| ||||| ||||| || Sbjct 6630414 GGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 6630473 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || || || || ||||| || ||||| | ||||| | | ||||| || Sbjct 6630474 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACTACAA 6630533 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||| | || | || ||||||||||| || || Sbjct 6630534 CATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCGTGGCGG 6630581 >seq4 Length=20862834 Score = 86.0 bits (94), Expect = 7e-12 Identities = 168/246 (68%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 64628 TGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGT 64687 |||||| ||||| ||||| | || ||||| | ||||| || |||||||| | Sbjct 15862982 TGTTCAATGCTATTGAGACCATGCCGGCTGTAAAGCGCAAGGCGGACTGGGCCATGTCCT 15862923 Query 64688 GGATGAATCGTGGG--TCGTCG---TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGA 64742 |||| ||| | | ||| | |||| ||||| | || ||||| ||||| Sbjct 15862922 GGAT--ATCCTCGAAATCGGCCAACTTTGCCGAGCGTATTATTGCCTTTGCGGCCGTGGA 15862865 Query 64743 AGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGAT 64802 |||||| |||||| || || || || || ||||| || ||||| || || || Sbjct 15862864 AGGAATCTTCTTTAGCGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTCAT 15862805 Query 64803 GCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATT 64862 ||| |||||| | || || |||||||||||||| || ||||| || || ||| || || Sbjct 15862804 GCCCGGTCTGACCTTCTCCAACGAGCTGATCTCCCGTGACGAAGGTCTTCACTGCGACTT 15862745 Query 64863 TGCGGT 64868 |||||| Sbjct 15862744 TGCGGT 15862739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310357226720