Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5 161 9e-35 seq4 159 3e-34 seq2 127 2e-24 >seq5 Length=28826359 Score = 161 bits (178), Expect = 9e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| |||||||| || || || |||||| | || |||||||| || ||||| | Sbjct 15756119 CCATGCAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCTT 15756060 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | || || | |||||| || || || ||||||||||| || || || |||| Sbjct 15756059 CGGATACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATC 15756000 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||||||||| || | ||| ||||| ||||||||||| | || | || ||||| | Sbjct 15755999 AACAGCGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTATA 15755940 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||| |||||||| ||||| ||||| || | || | || ||||| Sbjct 15755939 ACATTCAGAAGGAGTCCACCTTGCATTTAGTACTTCGGCTTCGTGGTGG 15755891 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || |||||| | || || | || || || || || Sbjct 28457679 ATGCAAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 28457620 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| || ||||| || || ||||| Sbjct 28457619 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 28457560 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || |||| || | || | ||||| |||||| Sbjct 28457559 CAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 28457500 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | || |||| ||||| || Sbjct 28457499 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGCGGTGGTAT 28457450 >seq4 Length=20862834 Score = 159 bits (176), Expect = 3e-34 Identities = 202/277 (73%), Gaps = 3/277 (1%) Strand=Plus/Minus Query 135465 ATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGAT 135524 |||||| |||||||| | || || | |||||| |||||| ||||| |||||||||| Sbjct 9425847 ATGACC---TGTGGAACTCTGCCCAGCTGCAGCTGGTGCGAGAGGGCAAGATGCACGGAT 9425791 Query 135525 TTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGC 135584 || | |||||||| ||||| || || ||| | || ||| | || |||| | |||||| Sbjct 9425790 TTCTTCGCATGTACTGGGCCAAGAAAATACTCGAGTGGACGGCCACGCCGGAGCAGGCGC 9425731 Query 135585 TACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCT 135644 | | |||| || | | || || | ||||| |||| || |||||| | ||||||| Sbjct 9425730 TGGAGTACGCGATCCTGCTGAACGACAAGTACAGCCTAGACGGGCGCGATCCCAATGGCT 9425671 Query 135645 ACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAG 135704 | || || || |||||||| ||| | || |||||||| || ||||||||||| Sbjct 9425670 ATGTGGGCTGCATGTGGTCCATTGGGGGCATACACGATATGGGCTGGAAGGAGCGAGCGA 9425611 Query 135705 TGTTTGGCAAGATTCGCTATATGAACTATGACGGTTG 135741 | || || ||||||||||| ||||||||| | || || Sbjct 9425610 TATTCGGAAAGATTCGCTACATGAACTATCAAGGATG 9425574 >seq2 Length=30136903 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| |||| || || | || || || || ||||| || ||| Sbjct 19092778 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAGCCATCC 19092719 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || || || || || || || Sbjct 19092718 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 19092659 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || |||| || | || |||| || |||||| Sbjct 19092658 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAAC 19092599 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | |||||||| ||||| | || ||||| || Sbjct 19092598 ATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGTCTCCGCGGTGGTAT 19092549 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || ||||||||||| || | || || || || ||||| || ||| Sbjct 19092550 ATGCAGATATTCGTGAAGACTCTGACCGGAAAAACCATCACCCTGGAGGTGGAGCCATCC 19092491 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || ||||| || || || || || || || Sbjct 19092490 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 19092431 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||| || | || |||| || |||||| Sbjct 19092430 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGACTACAAC 19092371 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | |||||||| ||||| | || || || Sbjct 19092370 ATCCAGAAGGAGTCGACTCTCCATTTGGTGCTGCGTCTCCGTGGCGG 19092324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918367381120