Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=28826359 Score = 104 bits (114), Expect = 2e-17 Identities = 328/507 (65%), Gaps = 10/507 (2%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 || || |||| || ||||| || |||| |||| |||||| | || | || | Sbjct 2480142 ATGTTCAGCTTTGGAAACGGCCGCGGCTTGCGTTTCAGCTGCTCCTTCAGTGGATCAACA 2480201 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 ||||| || || | ||| || || |||| || || | | || || | ||| || Sbjct 2480202 TGGTTAAGATACACATGAGCGTCGCCCATGGTGTGGATAAAGTCGCCCGTCTTCAAGCCA 2480261 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||||| || |||||||| || ||||| ||||| || |||||||| ||||| || Sbjct 2480262 GTTACATGGGCTATCATGTAGGTCAGCAGGGCGTAGGATGCGATGTTGAATGGCACGCCA 2480321 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC------ATTCGCG 6727 | |||||||| | || ||||| ||||||||||||||||| || | || | Sbjct 2480322 AGGCCCATGTCGGCGCTGCGCTGATACAGCTGGCAGGACAGCTCTCCGCGGGTCTGCGAG 2480381 Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 |||||||| || || ||||| || ||||| ||||| || | ||| || Sbjct 2480382 ACGTAGAACTGTGCCAGACAATGGCAGGGCGGGAGTGCCATTTTGGGTATGTCCAGGGGA 2480441 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 ||||| || |||| | ||| | | || || || || | | |||||| || || Sbjct 2480442 TTCCATGCAGACATGATGATGCGACGATCGGACGGATTATGCCTGATGGTGTCAATTACT 2480501 Query 6848 TACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCC 6907 | ||| ||||| |||| || ||||| | |||| | ||| || || Sbjct 2480502 TGGCGCAATTGGTCGATGCCCTTGCCGCTGTAGTCATCGTCGCAAGTGCCATATTCGGCA 2480561 Query 6908 CCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGG 6967 |||||||| | |||||| || || ||||| || |||| || ||| | || ||| || Sbjct 2480562 CCAAAGTGACGCCACTGAAAGCCATAGACTGGACCCAGATCTCCCAC--GGCGCGATCGG 2480619 Query 6968 AA--CCCCCGCTTGTCCAGAAAGTCTC 6992 | ||| | ||||||||| | |||| Sbjct 2480620 TATGGCCCAGTTTGTCCAGATACTCTC 2480646 Score = 104 bits (114), Expect = 2e-17 Identities = 328/507 (65%), Gaps = 10/507 (2%) Strand=Plus/Minus Query 34353 GAGACTTTCTGGACAAGCGGGGG--TTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGT 34410 |||| | ||||||||| | ||| | || ||| || | ||| || |||| || || Sbjct 2480646 GAGAGTATCTGGACAAACTGGGCCATACCGATCGCGCC--GTGGGAGATCTGGGTCCAGT 2480589 Query 34411 CTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTC 34470 ||| || || |||||| | |||||||| || || ||| | |||| | ||||| Sbjct 2480588 CTATGGCTTTCAGTGGCGTCACTTTGGTGCCGAATATGGCACTTGCGACGATGACTACAG 2480529 Query 34471 GGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGA 34530 || |||| ||||| ||| | || || |||||| | | || || || || Sbjct 2480528 CGGCAAGGGCATCGACCAATTGCGCCAAGTAATTGACACCATCAGGCATAATCCGTCCGA 2480469 Query 34531 CAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCC 34590 | | ||| | |||| || ||||| || ||| | || ||||| ||||| || Sbjct 2480468 TCGTCGCATCATCATGTCTGCATGGAATCCCCTGGACATACCCAAAATGGCACTCCCGCC 2480409 Query 34591 GTGCCACACCCTCTGCCAATTCTACGTCGCGAAT------GGGGAGCTGTCCTGCCAGCT 34644 ||||| || || ||||||||| || | || ||||||||||||||||| Sbjct 2480408 CTGCCATTGTCTGGCACAGTTCTACGTCTCGCAGACCCGCGGAGAGCTGTCCTGCCAGCT 2480349 Query 34645 CTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCT 34704 ||||| || | |||||||| | || ||||| |||||||| || ||||| || Sbjct 2480348 GTATCAGCGCAGCGCCGACATGGGCCTTGGCGTGCCATTCAACATCGCATCCTACGCCCT 2480289 Query 34705 GCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTT 34764 ||| || |||||||| || ||||| || ||| | || || | | || || | Sbjct 2480288 GCTGACCTACATGATAGCCCATGTAACTGGCTTGAAGACGGGCGACTTTATCCACACCAT 2480229 Query 34765 GGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGA 34824 ||| || || ||| | || || ||||| | || | || | |||||| |||| | Sbjct 2480228 GGGCGACGCTCATGTGTATCTTAACCATGTTGATCCACTGAAGGAGCAGCTGAAACGCAA 2480169 Query 34825 GCCCCGACCGTTCCCCCAGCTCAAAAT 34851 ||| || ||||| || |||| || || Sbjct 2480168 GCCGCGGCCGTTTCCAAAGCTGAACAT 2480142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262366380320