Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 >seq1 Length=22123056 Score = 105 bits (116), Expect = 5e-18 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| ||||| |||||||| || ||||| || || || | || || || | Sbjct 6630352 AAAATGCAGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 6630411 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| ||||| || || ||||| || || |||| | Sbjct 6630412 TCGGACACCATCGAGAAT--GTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAG 6630469 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || || || ||||| || || |||| |||| ||| | |||||||| | Sbjct 6630470 ATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGACT 6630529 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 |||||||||| || ||| ||||||||| ||||| |||||| | |||||||||| Sbjct 6630530 ACAACATCCAGAAGGAGTCCACTTTGCACTTGGTATTGCGTCTTCGTGGCGGCG 6630583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862373977562