Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq5 176 1e-38
seq2 168 2e-36
seq1 154 3e-32
>seq5
Length=28826359
Score = 176 bits (194), Expect = 1e-38
Identities = 157/197 (80%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
|||||||| || || ||||||||||| | || || | |||||||||| ||||||||
Sbjct 15755921 GTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCA 15755980
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037
|||||||| | || ||||| || ||||||| |||||| |||||||||||||| |||
Sbjct 15755981 GCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 15756040
Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097
|| ||||||||||| || || ||| ||||| ||||| || ||||| ||||| || |||
Sbjct 15756041 ACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTC 15756100
Query 211098 TTTACAAACACCTGCAT 211114
|||||||| | ||||||
Sbjct 15756101 TTTACAAAGATCTGCAT 15756117
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||| || |||||||| || || | || || | |||||
Sbjct 28457468 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 28457527
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
||||||||||| || |||||||| || || || || || || |||| || |||||||||
Sbjct 28457528 TCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 28457587
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||||||| || ||||| | ||||| |||
Sbjct 28457588 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 28457647
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || |||||||| || || || | ||||||||
Sbjct 28457648 TTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682
>seq2
Length=30136903
Score = 168 bits (186), Expect = 2e-36
Identities = 159/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| ||||| ||||| || |||||||| || |||| ||| || | ||||| |||||||||
Sbjct 19092348 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGC 19092407
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
||||| |||||||| || || || ||||| || || | ||| |||||||||||||||||
Sbjct 19092408 TTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 19092467
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||||| || |||||||| || || ||||| || ||||| || ||||| ||
Sbjct 19092468 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCGGTC 19092527
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|||||||| || || | ||||||
Sbjct 19092528 AGAGTCTTCACGAATATCTGCAT 19092550
Score = 168 bits (186), Expect = 2e-36
Identities = 161/206 (78%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| ||||| ||||| || |||||||| || |||| ||| || | ||||| |||||||||
Sbjct 19092576 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCCAGCTGC 19092635
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
||||| |||||||| || || || |||||||| || | ||| |||||||||||||||||
Sbjct 19092636 TTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTG 19092695
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|||||||| || |||||||| || || ||||| || ||||| || ||||| ||
Sbjct 19092696 GCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTTTTTCCAGTC 19092755
Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117
| || || ||||| | |||||||||
Sbjct 19092756 AAGGTTTTCACAAAGATCTGCATTTT 19092781
>seq1
Length=22123056
Score = 154 bits (170), Expect = 3e-32
Identities = 169/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | | || | ||| | ||||||||| || |||||||| || || | | ||
Sbjct 6630576 ACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGT 6630517
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||| || |||||||||||||| |||||||| | || || || || || |||| ||
Sbjct 6630516 ACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCC 6630457
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || || || ||||||||||| ||| |||||||||||
Sbjct 6630456 CTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAG 6630397
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||||| ||||| || || || || || || || | |||||||||
Sbjct 6630396 GGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTT 6630352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151910890190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |