Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq5 149 1e-30
seq1 145 2e-29
seq2 125 2e-23
>seq5
Length=28826359
Score = 149 bits (164), Expect = 1e-30
Identities = 162/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || || || || |||| ||||| |||| || ||| | |||||
Sbjct 28457468 AGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 28457527
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| || || || || || || ||||| || ||||||||
Sbjct 28457528 TCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 28457587
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| |||| || || || || ||||| |||
Sbjct 28457588 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTC 28457647
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || | |||||| | ||| | |||||||||
Sbjct 28457648 TTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
||||| || || || | || ||||| | || |||| |||||||| | ||||| |||
Sbjct 15755921 GTGGACTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCA 15755980
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || ||||| || || ||||| ||||| ||||| |||||||| ||
Sbjct 15755981 GCGAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 15756040
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
||| ||||||||| || || | ||| || || | || || ||||||||||| | ||
Sbjct 15756041 ACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTC 15756100
Query 225697 TTTATGAACACTTGCAT 225713
|||| || | |||||
Sbjct 15756101 TTTACAAAGATCTGCAT 15756117
>seq1
Length=22123056
Score = 145 bits (160), Expect = 2e-29
Identities = 167/225 (74%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||| | |||||| || || |||| ||||| |||| ||||||
Sbjct 6630576 ACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGT 6630517
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| || || || |||||||| || |||||||| | || || || || || ||||| ||
Sbjct 6630516 ACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCC 6630457
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| ||| ||||||||||| |||| || || || |
Sbjct 6630456 CTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAG 6630397
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| |||||||| |||| ||||| | ||| | ||||||||
Sbjct 6630396 GGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTT 6630352
>seq2
Length=30136903
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | |||||||| || || || |||| ||||| || | | |||
Sbjct 19092329 ACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGT 19092388
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||||||||| || || || ||||| || || || ||
Sbjct 19092389 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCC 19092448
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| |||||| || |||||||| || | ||||| || |
Sbjct 19092449 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAG 19092508
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || |||| ||| || | ||| | |||||
Sbjct 19092509 GGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192531108324164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |