Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 691 0.0 seq4 154 2e-32 >seq5 Length=28826359 Score = 691 bits (766), Expect = 0.0 Identities = 1294/1885 (69%), Gaps = 31/1885 (2%) Strand=Plus/Minus Query 76770 TTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATA 76829 ||||| || | ||||| || |||| | || |||||||| |||| ||||||||| Sbjct 15308264 TTCTTGTCGACAGTAAATTGTATTGCGTTGGCGGCAGGTTTTGTGCGTAAATAGTACATT 15308205 Query 76830 CCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTA 76889 || |||||||| || |||| | | ||||| ||| ||||| ||| || | Sbjct 15308204 CCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAATGTATGGATGTCAATTTTCCGTAGTTG 15308145 Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || || |||| |||| ||| | ||||||||||||||| || || || ||||||||||| Sbjct 15308144 GGCTCTGCTACGTGAACATTAAACGACTGACTTTGATCAATAAATGCACCTCTATCAGCA 15308085 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 |||||||| || ||| ||| | ||||||||| | |||||| ||| | | | | Sbjct 15308084 GCCATTTTAATTGTGGATTTTACTGAAATTTCCCATACAGTTTTATAAA---GATCGCGA 15308028 Query 77010 TCATCT---GGAAG-GTTTG--TATTTTGAATGGAACCACCATCTG-ATATAATTGTATT 77062 | | | |||| |||| ||| ||||||||| || || ||| | || ||| |||| Sbjct 15308027 ACCTTTTGGGGAATAGTTTCAATATCTTGAATGGAGCC-CCTGCTGGAAATTATTTTATT 15307969 Query 77063 CTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAAC 77122 || || ||||||| ||| || | | |||||||||| | || | | |||| |||| || Sbjct 15307968 TTTCATCTCATCATCCCATAAGTCCAACTCTGTTAAATCCCTCAATAAATGATGATTGAC 15307909 Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182 | ||||||||| ||||| ||||||| | || |||||||| ||||||||||||| | Sbjct 15307908 CACTTGAAATTCACCAGATAATACTCGTCTCGTATAAATATTTGTGGTATATGGTTCGAA 15307849 Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242 ||||| || || |||| |||||| |||||||| || || ||||| || || || || || Sbjct 15307848 TGATTCGTTATTACCCATAATTTGTGCAGTAGATGCTGTAGGCATCGGCGCTACTAACAA 15307789 Query 77243 ACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 77302 ||| || | || || || | || | ||||| || || ||||||||| || | Sbjct 15307788 CGAATTCCTAATTCCGTGCTTTTTAATGTCTTCTTTCAGGCTTTGCCAATCCCATAGGTT 15307729 Query 77303 TGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATT 77362 | || |||||| | ||| |||||||||||||| || || || ||| | Sbjct 15307728 CGTTGGAGTTTTATCCCACATATCATATTGTAGAATTCCTTTGCTTACAGGACTTCCTTC 15307669 Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||| |||||||| || || || || ||| ||||||||||| ||||| | ||||| | Sbjct 15307668 ATAGGTTTCATATGGACCAAATGCTTGAGCAAGTTCACAACTAGCTTCTAGAGCTCCAAA 15307609 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 |||||||||||| || || | | || | | ||||| || ||| | ||| | Sbjct 15307608 ATAAATTGTTTCAAATATTTGTTGGTTTAAAAGACCGGCTTCTTCGCTTTCATAGGGAAA 15307549 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | | | | ||| || || || |||| || |||| || ||||| || || | ||| || Sbjct 15307548 ACGCATTAAAATTAAAGCGTCAGCTAGACCTTGAATACCTATACCGATTGGACGATGCCT 15307489 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 |||||| | || |||||||| | ||| ||||| || |||||||||||||| || || Sbjct 15307488 TAAATTGGACTTCTTGGCTTCTGGCAAAGGGTAATAGTTGATGTCTATAATTTTGTTAAG 15307429 Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA---TCTTCCATC 77659 |||| | |||| ||| || || |||| ||| |||||| | | || | | Sbjct 15307428 ATTTTTGGCAACAGTTTTGGTTACTTCTTTTAATTTTTTGAAATCATACGTTTTTTCTGC 15307369 Query 77660 TATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTT 77719 | | || |||||||||| ||||| || |||| ||| || || || | ||||| || Sbjct 15307368 TGTTACGAACATGTTCAGTGCTATTGAAGCTAAATTGCAGACAGCGATCTCATCAGGTGC 15307309 Query 77720 GGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTG 77779 | || | | || || ||||||| |||||| ||||| |||||||| | ||||||||| Sbjct 15307308 TGAGTACTCGACAATTTCTGTACATAAATTACTGCATTTAATAGTGCCAACATTTTGTTG 15307249 Query 77780 GTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 ||||||||| ||||||| || |||||| |||| || | || | || ||||| | || Sbjct 15307248 ATTGCTCTTTCTATTGCAGGAATCCTTAAAAAGCATGTATGGGTTACCAGTTTCCACTTG 15307189 Query 77840 TGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA-TCATAGATTTGTATCGCCTCT 77898 ||||| ||||| | ||| | | |||| | | | |||| | | || | | Sbjct 15307188 CGATTCTATAATGGCAAACCATAAAGCCTGGGCTTCCACTGTTCGATTCGCA-CGTCCTT 15307130 Query 77899 CTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAG 77958 || ||||||| ||| || |||||||| || ||||||||||| | | |||| Sbjct 15307129 CTTGCTCATATTTGACATAGAGTTCTTCAAATTTTTCGCCCCAAACATCTTGAAGGCCAG 15307070 Query 77959 GGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGA 78018 | |||| || ||| ||||||||||||||| ||| | ||| ||| |||||||| || | Sbjct 15307069 GACATTTATGTGGACACATCAATGACCAGCTTTCATTTGCCTCAACACGTTTCATGAAAA 15307010 Query 78019 GATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTAT 78078 ||||||| ||||||| ||| ||| ||||| || | || | |||||| ||||| || | Sbjct 15307009 GATCAGGAATCCATAAAGCGTAAAAAAGATCACGTGCTCGGTTTTCTTCTTTTCCAGTGT 15306950 Query 78079 TCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCA 78138 | |||| || || | |||||| | || ||| |||||||| || |||| ||| || || | Sbjct 15306949 TTCTTTTGAGGTCTAAAAACTCAAAAACATCTGAATGCCAGGGCTCTAAATAAATAGCAA 15306890 Query 78139 TAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTC 78198 | ||||||| ||| |||||||||||| | ||||| || |||||| |||||| Sbjct 15306889 AGGCACCAGGTCTTTTTCCACCTCCCTGATCAACATATCGAGCCACATTATTAAAAACTC 15306830 Query 78199 TCAACATTGGAA-TAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTT 78257 | |||||||||| |||| || || || || || || |||||| | || || | || | Sbjct 15306829 TTAACATTGGAACTAAT-CCATTCGACGTACCGTTCGTTCCACATATTGAAGTGCCTTTA 15306771 Query 78258 GCGCGAATATTACTAATGGA---TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 || ||||| |||| | || || ||||| ||||| || || || || || Sbjct 15306770 GCACGAAT----GCAATGAACATTAGTCCGATTCCACCTGCTGATTTGGAAATCAGTGCA 15306715 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCC---ATCATGTTAAGAAGA 78371 || ||| | || | | ||||| || || || |||| |||| | | |||| Sbjct 15306714 CATTGTTCAACTGATTTAAAAATACCTTCAAT--TG-AATCCGAATTCATTGTCAAAAGA 15306658 Query 78372 AAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGC 78431 ||||| |||| |||| | || || | ||| ||| | || || || |||||| Sbjct 15306657 AAACACGAGGACAATTGAGGTCGATTTGTAGCAGCAGCAAAAAGCGTTGGCGAGGCATGC 15306598 Query 78432 GTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGA 78491 ||||| || |||||| ||||| ||||| ||||| | || | || || || | | Sbjct 15306597 GTAAAGTATCGTTCAGACAGTAGGTTGTAAGTTTCCACTGCCGCATCAATATCGTCTCCA 15306538 Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 ||||| || | || || ||||||| ||| || || || | ||| | | || |||| Sbjct 15306537 TGAATACCAAGAGCGACGCGCATCAGCATGTGTTGTGGACGTTCTGCAATTTTCCCATTT 15306478 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 78611 || || | | || || || | || ||||| ||||||||||| || ||| ||| Sbjct 15306477 ATCTTAAGTAGATAGGAACGCTCGAGCGTCTTAAATCCAAAATAGTTATAACCAAAATCT 15306418 Query 78612 CTCTCGTAAATAATAACAGAATTTA 78636 | || ||||||||| |||| |||| Sbjct 15306417 CGGTCATAAATAATAGCAGAGTTTA 15306393 >seq4 Length=20862834 Score = 154 bits (170), Expect = 2e-32 Identities = 442/670 (66%), Gaps = 15/670 (2%) Strand=Plus/Plus Query 48010 CACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAG 48069 |||| ||||| || || | || || || || || || || || ||||| || ||||| Sbjct 15862608 CACAGTTCATGCCAATCAAATTGACGGGCAGGGCTTCAGTGAGGAACTCCTGCTCGATTT 15862667 Query 48070 TGACAGCATCCACTATTATC--GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATG 48127 ||||||||| || ||| |||| | | | | || | | || | | || | ||| Sbjct 15862668 CCACAGCATCCCTGATGATCTCGATGATGC-GCTCCCGCT-TGGGCCGCTGCACTAGATG 15862725 Query 48128 TTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTT 48187 | | |||| | ||||| || || ||||||||||| || | || | ||||| Sbjct 15862726 GTGATACATGAGCACCGCAAAGTCGCAGTGAAGACCTTCGTCACGGGAGATCAGCTCGTT 15862785 Query 48188 AGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGA 48247 || || || ||||||||||| || ||||| || || |||||||| || | || |||| Sbjct 15862786 GGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTCAGCCAAAAGATCGAGGC-AAAGC 15862844 Query 48248 T-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG 48306 | || |||||| || ||||| ||||||||||| || ||| | ||| | | ||| Sbjct 15862845 TGCCGCTAAAGAAGATTCCTTCCACGGCCGCAAAGGCAATAATACGCTCGGCAAAGTTGG 15862904 Query 48307 C----TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATT 48362 | |||| | |||||| ||||| || ||||| ||||||| ||||| Sbjct 15862905 CCGATTTCG-AGGATATCCAGGACATGGCCCAGTCCGCCTTGCGCTTTACAGCCGGCATG 15862963 Query 48363 GTTTCTATAGCATTAAAGAGAAAGtttttttCAT--TGCTATCTTTAACGTAAGTATCTA 48420 || || |||||||| || | ||| || | ||| | | | ||| || || | Sbjct 15862964 GTCTCAATAGCATTGAACAAGTAGTCGCGCTCCTGCGGCTCCCGT--ATGTAGGTGTCAA 15863021 Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480 | | | || ||||| |||||||| | ||| || || || ||||| || ||||| || | Sbjct 15863022 TGAGCACGCTGTACATCTCGGAGTGCACATTCTCCATGGCTATCTGGAAGCCGTAGAAGC 15863081 Query 48481 ATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTA 48540 | | || || |||||||| |||||| || ||| || || ||| |||||| || || | Sbjct 15863082 AACGTGCCTCCGTGATCTGCACCTCCTGACTAAAGCGCTCGACCAGATTCTCGTTAACAA 15863141 Query 48541 TTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG 48600 | || || ||||| || || |||| ||||| ||||| || |||||| || Sbjct 15863142 TGCCGTCCGAGGCAGCGAAGAAGGCTAGCACATGGGAGATAAAGTAGCGCTCGTTGTCAG 15863201 Query 48601 TCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660 | || |||||| | || || |||| ||| || ||||| | ||||| || | Sbjct 15863202 TGAGACGGGCCCAGTCCGTCGCGTCCTTCGATAGATCCACCTCTTCCACGGTCCAGAAGG 15863261 Query 48661 ATGCCTCTGC 48670 | ||||| || Sbjct 15863262 AGGCCTCCGC 15863271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668747899840