Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 677 0.0 >seq5 Length=28826359 Score = 677 bits (750), Expect = 0.0 Identities = 1272/1852 (69%), Gaps = 31/1852 (2%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 || |||||||| |||| ||||||||| || |||||||| || |||| | | ||| Sbjct 15308231 GCAGGTTTTGTGCGTAAATAGTACATTCCGGTTTTTAGTCCAGCTTTCCAGGAGAAAAAA 15308172 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || ||| ||| | ||| || | || || |||| |||| ||| | |||||||||| Sbjct 15308171 TGTATGGATGTCAATTTTCCGTAGTTGGGCTCTGCTACGTGAACATTAAACGACTGACTT 15308112 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| || || || ||||||||||| |||||||| || ||| ||| | ||||||| Sbjct 15308111 TGATCAATAAATGCACCTCTATCAGCAGCCATTTTAATTGTGGATTTTACTGAAATTTCC 15308052 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCT---GGAAGATTTG---TATTTTGAATG 75631 || | |||||| ||| | | | | | | | |||| | || ||| ||||||| Sbjct 15308051 CATACAGTTTTATAAA---GATCGCGAACCTTTTGGGGAATAGTTTCAATATCTTGAATG 15307995 Query 75632 GATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTT 75691 || || | || || ||| |||| || |||||||||| ||| || | ||| ||| Sbjct 15307994 GAGCCCCTGCTGGAAATTATTTTATTTTTCATCTCATCATCCCATAAGTCCAACTCTGTT 15307935 Query 75692 AAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTG 75751 ||| | || | | |||| |||| || | ||||||||| ||||| ||||||| || || Sbjct 15307934 AAATCCCTCAATAAATGATGATTGACCACTTGAAATTCACCAGATAATACTCGTCTCGTA 15307875 Query 75752 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAA 75811 |||||||| ||||||||||||| | ||||| || || |||| |||||| ||||| || Sbjct 15307874 TAAATATTTGTGGTATATGGTTCGAATGATTCGTTATTACCCATAATTTGTGCAGTAGAT 15307815 Query 75812 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 75871 || || ||||| || || || || || ||| || | || || || | || | ||| Sbjct 15307814 GCTGTAGGCATCGGCGCTACTAACAACGAATTCCTAATTCCGTGCTTTTTAATGTCTTCT 15307755 Query 75872 TTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGA 75931 || || || ||||||||| || | | ||| |||||| | ||| ||||||||| Sbjct 15307754 TTCAGGCTTTGCCAATCCCATAGGTTCGTTGGAGTTTTATCCCACATATCATATTGTAGA 15307695 Query 75932 ATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGT 75991 ||||| ||||| || ||| | ||| ||||| || | || || ||| ||| Sbjct 15307694 ATTCCTTTGCTTACAGGACTTCCTTCATAGGTTTCATATGGACCAAATGCTTGAGCAAGT 15307635 Query 75992 TCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTT--ATTAAGAT 76049 || ||||| || |||| || || ||||||||||||| || || || || |||| | Sbjct 15307634 TCACAACTAGCTTCTAGAGCTCCAAAATAAATTGTTTCAAATAT-TTGTTGGTTTAAAAG 15307576 Query 76050 CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCT 76109 | ||||| || ||| | ||| || | | | ||| || || || ||||| || | Sbjct 15307575 ACCG-GCTTCTTCGCTTTCATAGGGAAAACGCATTAAAATTAAAGCGTCAGCTAGACCTT 15307517 Query 76110 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGT 76169 ||| || ||||| || || | ||| || |||||| | | |||||||| | ||||| Sbjct 15307516 GAATACCTATACCGATTGGACGATGCCTTAAATTGGACTTCTTGGCTTCTGGCAAAGGGT 15307457 Query 76170 AATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTA 76229 |||| || || ||||||||||| || |||||| || |||| ||| || || |||| Sbjct 15307456 AATAGTTGATGTCTATAATTTTGTTAAGATTTTTGGCAACAGTTTTGGTTACTTCTTTTA 15307397 Query 76230 GTTTGAGAAAATCAAA---TTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTA 76286 ||| |||||| | |||| | || | || ||||| || || ||||| || |||| Sbjct 15307396 ATTTTTTGAAATCATACGTTTTTTCTGCTGTTACGAACATGTTCAGTGCTATTGAAGCTA 15307337 Query 76287 GATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTAC 76346 ||| || || || | ||||| || | || | | || || || |||| ||||| Sbjct 15307336 AATTGCAGACAGCGATCTCATCAGGTGCTGAGTACTCGACAATTTCTGTACATAAATTAC 15307277 Query 76347 TACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAA 76406 | || || ||||| |||| ||||||||| ||||||||| | || || || |||||| ||| Sbjct 15307276 TGCATTTAATAGTGCCAACATTTTGTTGATTGCTCTTTCTATTGCAGGAATCCTTAAAAA 15307217 Query 76407 GAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAG 76466 | | | || | |||||||| | || ||||| ||||| | ||| | | | Sbjct 15307216 GCATGTATGGGTTACCAGTTTCCACTTGCGATTCTATAATGGCAAACCATAAAGCCTGGG 15307157 Query 76467 CTTTTA-TTATAGATTTGTA--TCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAA 76523 ||| | | | |||| | | || ||||| | ||||||| ||| | ||||| Sbjct 15307156 CTTCCACTGTTCGATTCGCACGTC-CTTCTTGC--TCATATTTGACATAGAGTTCTTCAA 15307100 Query 76524 ATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACT 76583 ||| || ||||||||||| | | |||||||||| || ||||||||||||||||| Sbjct 15307099 ATTTTTCGCCCCAAACATCTTGAAGGCCAGGACATTTATGTGGACACATCAATGACCAGC 15307040 Query 76584 CACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 76643 ||| | ||| ||| |||||||| || |||||||| ||||||| ||| ||| |||| Sbjct 15307039 TTTCATTTGCCTCAACACGTTTCATGAAAAGATCAGGAATCCATAAAGCGTAAAAAAGAT 15306980 Query 76644 CTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATAT 76703 | || | || |||||| ||||| || || |||| || |||| ||||| | || || Sbjct 15306979 CACGTGCTCGGTTTTCTTCTTTTCCAGTGTTTCTTTTGAGGTCTAAAAACTCAAAAACAT 15306920 Query 76704 CAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGAT 76763 | |||||||| || |||| ||| || || | |||| |||| ||| ||||||||||| Sbjct 15306919 CTGAATGCCAGGGCTCTAAATAAATAGCAAAGGCACCAGGTCTTTTTCCACCTCCCTGAT 15306860 Query 76764 CTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAA-TAATGCCGTTAGATGTA 76822 | | ||||| || |||||| ||||||| |||||||||| |||| || || || ||| Sbjct 15306859 CAACATATCGAGCCACATTATTAAAAACTCTTAACATTGGAACTAAT-CCATTCGACGTA 15306801 Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 || || |||||| | || || | || |||||||| | || | ||| || ||| Sbjct 15306800 CCGTTCGTTCCACATATTGAAGTGCCTTTAGCACGAATGCAATGAACA-TTAGTCCGATT 15306742 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || ||||| ||| || || || ||||| ||| | || | | | || || || || Sbjct 15306741 CCACCTGCTGATTTGGAAATCAGTGCACATTGTTCAACTGATTTAAAAATACCTTCAATT 15306682 Query 76943 CTATC---ATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 ||| || ||| ||| || ||||||||| |||| |||| | || || | Sbjct 15306681 GAATCCGAATTCAT--TGTCAA-AAGAAAACACGAGGACAATTGAGGTCGATTTGTAGCA 15306625 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||| ||| | || || || ||||| || || || |||||| ||||| ||||| ||| Sbjct 15306624 GCAGCAAAAAGCGTTGGCGAGGCATGCGTAAAGTATCGTTCAGACAGTAGGTTGTAAGTT 15306565 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 || | | || || ||||| | |||||| || | |||||| ||||||| ||| || Sbjct 15306564 TCCACTGCCGCATCAATATCGTCTCCATGAATACCAAGAGCGACGCGCATCAGCATGTGT 15306505 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 || || |||||| || | || |||||| || | | || || || | || ||| Sbjct 15306504 TGTGGACGTTCTGCAATTTTCCCATTTATCTTAAGTAGATAGGAACGCTCGAGCGTCTTA 15306445 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 || ||||||||||| || ||| |||| || ||||||||| | || |||| Sbjct 15306444 AATCCAAAATAGTTATAACCAAAATCTCGGTCATAAATAATAGCAGAGTTTA 15306393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934346529920