Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 1e-19
seq5 111 4e-19
seq1 102 2e-16
>seq2
Length=30136903
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| ||||| || ||||||||||| || | | ||| | |||||
Sbjct 19092339 AGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 19092398
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| || | ||||||||| | | |||||| ||||| ||
Sbjct 19092399 TCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 19092458
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| || ||| || || || || || |||
Sbjct 19092459 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTT 19092518
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||||||||| | ||||||
Sbjct 19092519 TTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
Score = 109 bits (120), Expect = 1e-18
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| ||||| || ||||||||||| || | | ||| | |||||
Sbjct 19092567 AGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 19092626
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | ||||||||| | | |||||| ||||| ||
Sbjct 19092627 TCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCC 19092686
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| || ||| || || || || || |||
Sbjct 19092687 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGGTT 19092746
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || | || ||||| |||| |||||||||
Sbjct 19092747 TTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 19092781
>seq5
Length=28826359
Score = 111 bits (122), Expect = 4e-19
Identities = 152/211 (72%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || ||||||||||| |||| | ||| | ||||| || |
Sbjct 28457473 CAAG-TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCA 28457531
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| || | |||||| || | | || || ||||| || || |
Sbjct 28457532 GCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 28457591
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| |||| | | |||| || ||| || || | || || || ||||
Sbjct 28457592 TCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGC 28457651
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
| |||||||| |||||||||| ||||||||
Sbjct 28457652 CAGTGAGAGTTTTCACGAAGATTTGCATTTT 28457682
>seq1
Length=22123056
Score = 102 bits (112), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || | ||| ||||| || ||||||||||| |||| ||||| | || || || |
Sbjct 6630561 CAAG-TGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTCCTCCA 6630503
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| | | |||||| || | | || || ||||| || || |
Sbjct 6630502 GCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGA 6630443
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| |||| | | |||| || ||| || || || || || || ||||
Sbjct 6630442 TCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGTCTTGC 6630383
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
| || || || |||||||| | |||||||||
Sbjct 6630382 CAGTCAGGGTTTTCACGAAAATCTGCATTTT 6630352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820711300026
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |