Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq5 167 5e-36
seq2 159 7e-34
seq1 158 3e-33
>seq5
Length=28826359
Score = 167 bits (184), Expect = 5e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || |||||||| | ||| || ||| || || || ||||| || ||||
Sbjct 15755891 CCACCACGAAGCCGAAGTACTAAATGCAAGGTGGACTCCTTCTGAATGTTATAATCAGAC 15755950
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || |||||||| || | ||| || || || ||||||||||| ||||| || |||
Sbjct 15755951 AGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATCAAACGCTGTTGATCTGGAGGA 15756010
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || ||||| |||||||| ||||| || | ||||| || ||||||| ||||||
Sbjct 15756011 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCGATGGTATCCGAAGGTTCGACC 15756070
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| ||||| || ||||| ||||| | ||||| || || ||||||||
Sbjct 15756071 TCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTACAAAGATCTGCAT 15756117
Score = 161 bits (178), Expect = 2e-34
Identities = 175/232 (75%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| |||||||| || |||| || | || || || |||||||||||||| |
Sbjct 28457452 ACCACCGCGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 28457511
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || ||||| ||||||| ||| || || || ||
Sbjct 28457512 CAGAGTGCGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGG 28457571
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| || || || | ||||| ||||| || | |||||
Sbjct 28457572 AATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 28457631
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103
|| | ||||| ||||| || || | ||| || ||||| || |||||||||
Sbjct 28457632 CTCCAAGGTGATGGTCTTGCCAGTGAGAGTTTTCACGAAGATTTGCATTTTC 28457683
Score = 125 bits (138), Expect = 1e-23
Identities = 189/269 (70%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839
||||||||||| | || || ||| ||||||||| || ||||| | ||||||||||
Sbjct 597162 GTGAAAATGTAACGAGCGCTGGCACAGTCCTTGCCGCCCGTCAGCCGAGTACCAAACTGA 597221
Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899
|| ||| ||| |||| |||||||| ||| ||||| | ||| |||| |||||||
Sbjct 597222 CCGCGCGGCTCCAGCAAGTTGATGTTGTTCGAACCAACGTAGTTCTGGGCCAGATTCACG 597281
Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCA 273959
|| ||| ||| ||||| |||||||||||||| ||||| || || | | |||
Sbjct 597282 ATGGTCATCTGGAGGGAGACCTCGCCGTGGTGGTAGGCCGACATCTCCGCCACGGAGCCA 597341
Query 273960 CTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACC 274019
| ||| || |||||||| |||| | | ||| |||||||| | ||| |||
Sbjct 597342 GACAGCTGGGCCACCTTCACCTCGCGCTTGTCGTTGCGCTTGAAGCAAGTGAACATGACC 597401
Query 274020 TTCCGCTGCGAGGGCTTGAACCCATCAAC 274048
|| ||||| |||||| | ||||| ||
Sbjct 597402 TTGCGCTGGCCGGGCTTCAGGCCATCCAC 597430
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 12557234 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 12557290
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 12562045 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 12561989
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 12589566 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 12589510
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 12597319 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 12597375
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 12598141 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 12598085
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 12631902 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 12631846
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 23035317 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 23035373
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 23035652 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 23035708
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 23037780 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 23037724
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 23038230 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 23038174
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 23038693 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 23038637
>seq2
Length=30136903
Score = 159 bits (176), Expect = 7e-34
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || |||| ||| | || || || |||||||||||||| |
Sbjct 19092551 ACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 19092610
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||||||||| || || || ||||| ||||| | ||| || |||||| ||
Sbjct 19092611 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGG 19092670
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| || || ||| | || || ||||| || | || ||
Sbjct 19092671 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCAC 19092730
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||| || || || ||||| || || || || |||||||||||
Sbjct 19092731 CTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTT 19092781
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || || |||| ||| | || || || |||||||||||||| | |
Sbjct 19092324 CCGCCACGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 19092383
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || || ||||| | ||| || ||||| ||
Sbjct 19092384 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGG 19092443
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || ||| | || || ||||| || | || ||
Sbjct 19092444 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGATGGCTCCACC 19092503
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| || || || |||| |||||| ||||||||||||||
Sbjct 19092504 TCCAGGGTGATGGTTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 10658755 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 10658811
>seq1
Length=22123056
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || | ||||| || || ||| || || |||||||||||||| |
Sbjct 6630581 CCGCCACGAAGACGCAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6630522
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || || ||||| || || || ||||| ||||||||||| || || || |||
Sbjct 6630521 AAAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 6630462
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| || || || | ||||| |||||||| | || ||
Sbjct 6630461 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACC 6630402
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||||| ||||| ||||| || |||| || || ||||| |||||||||||
Sbjct 6630401 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAAATCTGCATTTT 6630352
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 21301971 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 21301915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046739119531924
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