Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19]
6 sequences; 136,728,780 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq5 140 2e-28
seq1 127 1e-24
seq2 122 6e-23
>seq5
Length=28826359
Score = 140 bits (154), Expect = 2e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || || |||||| ||||||||||| |||| || ||| | || ||
Sbjct 28457470 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 28457529
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| ||||| ||||||| |||||||||||||| || | || ||||| |||
Sbjct 28457530 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 28457589
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||| | || || ||||||| || || |||||
Sbjct 28457590 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 28457649
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| || |||||||||||||||||
Sbjct 28457650 GCCAGTGAGAGTTTTCACGAAGATTTGCAT 28457679
Score = 105 bits (116), Expect = 5e-18
Identities = 139/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| || ||||| ||||| | ||| || | || |||| ||||| || || ||
Sbjct 15755926 CTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAA 15755985
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||||||||| ||||||| ||| | ||||| || ||| ||||| || | |
Sbjct 15755986 GATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATT 15756045
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| | ||||| || | | ||| ||||| | || || ||||| ||||| |||||||| ||
Sbjct 15756046 TTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTAC 15756105
Query 44326 GAAGATTTGCATG 44338
||||| ||||||
Sbjct 15756106 AAAGATCTGCATG 15756118
>seq1
Length=22123056
Score = 127 bits (140), Expect = 1e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
||| |||| ||| | ||| |||||| ||||||||||| |||| | || ||||
Sbjct 6630567 CAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTC 6630508
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
||||||||||| ||||| |||||||||||||||||||||| || | || ||||| ||
Sbjct 6630507 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 6630448
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
| ||||| ||| | | | |||||||| | || || ||||| | || || ||
Sbjct 6630447 CTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGT 6630388
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || ||||| |||||||| || |||||
Sbjct 6630387 CTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 6630355
>seq2
Length=30136903
Score = 122 bits (134), Expect = 6e-23
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||||| || || || |||||| ||||||||||| || | || ||| | ||
Sbjct 19092338 CAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATC 19092397
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
||||||||||| || || ||||| | ||||||||| |||| || | || ||||| ||
Sbjct 19092398 CTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 19092457
Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303
| ||||| |||| | |||| | |||||||||| | |||||||||| || || |
Sbjct 19092458 CTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGG 19092516
Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| ||||| || || ||||||||||| || |||||
Sbjct 19092517 TTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550
Score = 118 bits (130), Expect = 8e-22
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | || | || ||||| || || || |||||| ||||||||||| ||
Sbjct 19092548 CATACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 19092607
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || ||| | || ||||||||||| ||||| ||||| | ||||||||| || |
Sbjct 19092608 CGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGG 19092667
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || ||||| ||| ||||| |||| | |||| | |||||||||| | |
Sbjct 19092668 GGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGATGGCT 19092726
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || || ||||| || | ||| ||||| ||||| |||||
Sbjct 19092727 CCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 19092778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990373675702
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