Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5 140 2e-28 seq1 127 1e-24 seq2 122 6e-23 >seq5 Length=28826359 Score = 140 bits (154), Expect = 2e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| ||||||||||| |||| || ||| | || || Sbjct 28457470 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 28457529 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| ||||| ||||||| |||||||||||||| || | || ||||| ||| Sbjct 28457530 CAGCTGCTTACCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 28457589 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | |||||||| | || || ||||||| || || ||||| Sbjct 28457590 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTT 28457649 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || ||||||||||||||||| Sbjct 28457650 GCCAGTGAGAGTTTTCACGAAGATTTGCAT 28457679 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || ||||| ||||| | ||| || | || |||| ||||| || || || Sbjct 15755926 CTCCTTCTGAATGTTATAATCAGACAGTGTTCGGCCATCTTCCAATTGCTTGCCAGCGAA 15755985 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||||||| ||||||| ||| | ||||| || ||| ||||| || | | Sbjct 15755986 GATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATT 15756045 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | ||||| || | | ||| ||||| | || || ||||| ||||| |||||||| || Sbjct 15756046 TTCGATGGTATCCGAAGGTTCGACCTCAAGAGTTATGGTCTTGCCCGTTAGGGTCTTTAC 15756105 Query 44326 GAAGATTTGCATG 44338 ||||| |||||| Sbjct 15756106 AAAGATCTGCATG 15756118 >seq1 Length=22123056 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 ||| |||| ||| | ||| |||||| ||||||||||| |||| | || |||| Sbjct 6630567 CAATACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCGTC 6630508 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| ||||| |||||||||||||||||||||| || | || ||||| || Sbjct 6630507 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 6630448 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||| ||| | | | |||||||| | || || ||||| | || || || Sbjct 6630447 CTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGAGGGCTCAACCTCGAGGGTGATGGT 6630388 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || ||||| |||||||| || ||||| Sbjct 6630387 CTTGCCAGTCAGGGTTTTCACGAAAATCTGCAT 6630355 >seq2 Length=30136903 Score = 122 bits (134), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||| || || || |||||| ||||||||||| || | || ||| | || Sbjct 19092338 CAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATC 19092397 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| || || ||||| | ||||||||| |||| || | || ||||| || Sbjct 19092398 CTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTC 19092457 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | ||||| |||| | |||| | |||||||||| | |||||||||| || || | Sbjct 19092458 CTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGATGGCTCCACCTCCAGGGTGATGG 19092516 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || || ||||||||||| || ||||| Sbjct 19092517 TTTTTCCGGTCAGAGTCTTCACGAATATCTGCAT 19092550 Score = 118 bits (130), Expect = 8e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| || || || |||||| ||||||||||| || Sbjct 19092548 CATACCACCGCGGAGACGCAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 19092607 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||| ||||| | ||||||||| || | Sbjct 19092608 CGAAAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGG 19092667 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| |||| | |||| | |||||||||| | | Sbjct 19092668 GGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGGATGGCT 19092726 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || || ||||| || | ||| ||||| ||||| ||||| Sbjct 19092727 CCACCTCCAGGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 19092778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990373675702