Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20miranda_20[refseq_20GCF_5F000269505.1_202013-04-19] 6 sequences; 136,728,780 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 159 8e-34 seq2 156 1e-32 seq1 147 5e-30 >seq5 Length=28826359 Score = 159 bits (176), Expect = 8e-34 Identities = 165/214 (77%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||||||||||||||| || || || |||||| | ||||| || Sbjct 28457682 AAAATGC---AAATCTTCGTGAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAG 28457626 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| |||||||||||||| ||||| ||||| |||||||| || || || || || Sbjct 28457625 CCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCA 28457566 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||||||||| || ||||| || ||||| | ||||| |||| Sbjct 28457565 GATCAGCAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGCACTCTGTCCGAC 28457506 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || ||||| |||| Sbjct 28457505 TACAACATCCAGAAGGAGTCGACCCTGCA-CTTG 28457473 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || || || || ||||| ||| || || Sbjct 15756114 CAGATCTTTGTAAAGACCCTAACGGGCAAGACCATAACTCTTGAGGTCGAACCTTCGGAT 15756055 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||| ||||||||||||||||| ||||| || || || Sbjct 15756054 ACCATCGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAACAG 15755995 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | |||||||| | || || | ||||||||| | Sbjct 15755994 CGTTTGATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACACTGTCTGATTATAACATT 15755935 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || ||||| Sbjct 15755934 CAGAAGGAGTCCACCTTGCAT 15755914 >seq2 Length=30136903 Score = 156 bits (172), Expect = 1e-32 Identities = 161/210 (77%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||| | || |||||||| |||||||| |||||||| Sbjct 19092781 AAAATGC---AGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCCTGGAGGTGGAG 19092725 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||||||| |||||||| || ||||| |||||||| || |||||||| || Sbjct 19092724 CCATCCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCT 19092665 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||||||||| || ||||| || ||||| | |||||| | || Sbjct 19092664 GACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTTCGGAC 19092605 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||| |||| || || || || || ||| Sbjct 19092604 TACAACATCCAGAAGGAGTCGACTCTCCAT 19092575 >seq1 Length=22123056 Score = 147 bits (162), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| || || || || || |||||||||||||| || Sbjct 6630352 AAAATGC---AGATTTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAG 6630408 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| |||||||||||||| ||||| ||||| |||||||| || || || || || Sbjct 6630409 CCCTCGGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCCCCA 6630468 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || | ||||||||||| || ||||| || || ||| | ||| | |||| Sbjct 6630469 GATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTTTGTCCGAC 6630528 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || |||| |||| Sbjct 6630529 TACAACATCCAGAAGGAGTCCACTTTGCA-CTTG 6630561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731107463164