Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6841 91.5 3e-13 seq6839 91.5 3e-13 seq6840 86.0 1e-11 >seq6841 Length=34148556 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 4351491 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 4351432 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 4351431 CCCCACGTTGGGC 4351419 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 28993646 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 28993705 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 28993706 CCCCACGTTGGGC 28993718 >seq6839 Length=26866924 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 21087171 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 21087230 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 21087231 CCCCACGTTGGGC 21087243 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 25288637 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 25288578 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 25288577 CCCCACGTTGGGC 25288565 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 25290862 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 25290803 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 25290802 CCCCACGTTGGGC 25290790 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 25321188 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 25321247 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 25321248 CCCCACGTTGGGC 25321260 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 909064 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 909123 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 909124 CCCACGTTGGGC 909135 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 24100787 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 24100846 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 24100847 CCCACGTTGGGC 24100858 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 25272345 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 25272286 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25272285 CCCACGTTGGGC 25272274 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 25291395 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 25291454 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25291455 CCCACGTTGGGC 25291466 >seq6840 Length=32352404 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||| ||||||||||||||||||| | ||| ||||||| ||||||||||||| Sbjct 31452773 CTTGCCCGGCTAGCTCAGTCGGTAGAGCATGACACTCTTAATCTCAGGGTCGTGGGTTCG 31452714 Query 165767 AGCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 31452713 GGCCCCACGTTGGGC 31452699 Score = 84.2 bits (92), Expect = 5e-11 Identities = 164/240 (68%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 61254 TTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCG 61313 ||||||||||||||||| | || | | |||||||| ||||||||||| || Sbjct 1635417 TTCAATCACGAGAGTCCGCGACGTGGCGAAAACTTTGTGACACGTAAAATTACCCGATCG 1635476 Query 61314 GTTGCAAATATTT--TTAACGGTGTCGAA--AAATGCATGTATCTAGGAAACATAGACTC 61369 || || || |||| |||| || || ||| | | | || || ||| | ||||| Sbjct 1635477 GTAGCGAAGATTTTGTTAA----ATCAAATGGAATACTTTGAGCTGGGCAACTTGGACTC 1635532 Query 61370 TAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACA 61429 ||| | ||||||||| |||| || ||| | ||||| |||||| ||||| |||| | Sbjct 1635533 GAAACGCGATTGGGGACATGCCAGCGACTATGTGGAGGCCATGTGGATGATGCTGCAGCG 1635592 Query 61430 AGATACTCCAGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGT 61489 || || || | || || || ||||| ||||| | ||| || || || ||||| || Sbjct 1635593 TGACACGCCTGCAGATTATGTGATTGCAACTGGTGAAACGCACAGCGTGCGGGAATTTGT 1635652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057731281395830