Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6839 197 1e-45 >seq6839 Length=26866924 Score = 197 bits (218), Expect = 1e-45 Identities = 490/735 (67%), Gaps = 14/735 (2%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| | ||| || |||| ||| ||| ||||| |||||||| ||||| || || Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCC-AG 16782 || || ||||||| || || ||||| | | | ||||| | || || || Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTT-GCCAACACCGAG 3409533 Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842 ||| | | | | |||||| |||||||| ||||| ||| |||| ||| | || ||||| Sbjct 3409534 TTCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCAT 3409593 Query 16843 TCCTAT-AAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 || || ||| | || || ||||| || || | ||| |||||| || ||| || | Sbjct 3409594 GCCAATCAAGTTG-ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCAT 3409652 Query 16902 CCTTAATAATACTAGCAACTCGTTC----CTCGGACGGTGTATGTTTAAGATGTTTAAAC 16957 || || || | | || || || ||||| || | | ||| ||| Sbjct 3409653 CCGAGATGATCTCAATGATGCGCTCACGGCTAGGACGTTGCACC----AAATGCCGGAAC 3409708 Query 16958 ATCAG-ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016 |||| ||| || || || ||||| || |||||||| | ||| | || || || || Sbjct 3409709 ATCATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAA 3409767 Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076 |||| ||||||||| || |||||||| | |||||| |||| ||| || ||| Sbjct 3409768 GGTCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACT 3409827 Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT 17136 |||||| || ||||| |||| || ||||| || | || ||| | | ||||| | || Sbjct 3409828 AAAGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTT 3409887 Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 |||||| || |||| ||||| ||| |||| | ||| ||||| | Sbjct 3409888 CGATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAAC 3409947 Query 17197 GGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 ||| || || | | || ||||||| | || | ||||| |||||||| || | ||| Sbjct 3409948 GGCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3410007 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||| || ||||| | ||||||||||| || ||||| || || || || || ||||| Sbjct 3410008 GTACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTC 3410067 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | |||||| || ||| | ||| || || | ||||| || || || ||||| ||| Sbjct 3410068 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGA 3410127 Query 17377 CGCGGCGAAAAACGC 17391 ||||| || || || Sbjct 3410128 AGCGGCAAAGAAGGC 3410142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517501343381880