Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6839 100 3e-16 >seq6839 Length=26866924 Score = 100 bits (110), Expect = 3e-16 Identities = 195/283 (69%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 ||||| || || ||||| ||||||| | ||||||||||| || |||||| | || Sbjct 677713 TTCATATAGCGAATCTTACCAAATATCGCGCGCTCCTTCCAGCCTTGGTCGTGAATCCCA 677654 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | | ||| | || || ||||| || || ||||| ||| || | ||| |||||| Sbjct 677653 CCGATGGACCACATGCAACCAACGTAGCCATTCGGATCGCGTCCATCCAGACT-GTACTT 677595 Query 119055 ATCGTTTAAGTAGATACAGACGCTTAA-CGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||||| || | || | | || || ||| |||||| || | |||| || | | Sbjct 677594 GTCGTTCAATAATATGCT-ATACTCAAGCGCTTGTTCCGGCGTTTCGGTCCACTCTAAAA 677536 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | ||||| ||||| ||||| || | | ||||||||||||| || || || | || ||| | Sbjct 677535 TCTTTTTGGCCCAATACATGCGCAGAAACCCGTGCATTTTGCCTTCCTTGACCAGCTGCA 677476 Query 119174 GTTGTGCGGTGTTCCATAGAGGATCGTGTGTACGGGCGTGTTC 119216 | || || | |||||| ||| |||| || || | ||| || Sbjct 677475 GCTGGGCCGAGTTCCACAGATCGTCGTAGGTGCGCGAGTGCTC 677433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511370667676120