Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6840 558 4e-154 seq6839 197 2e-45 >seq6840 Length=32352404 Score = 558 bits (618), Expect = 4e-154 Identities = 1257/1870 (67%), Gaps = 28/1870 (1%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 31473138 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 31473079 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || ||||| |||||||| || ||||| ||| |||| | || || |||| | Sbjct 31473078 CCCGCTTTCCATGAATAAAAATGGATTGATGTTAATTTTCCATAATTGGGTTCAGCTACA 31473019 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || ||||| | ||| ||||||||||| || || ||||| || || || ||||||||||| Sbjct 31473018 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 31472959 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 53046 | | || || ||||||||| | ||||||||| || || | ||| |||| |||| Sbjct 31472958 GTTGATTTAACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 31472900 Query 53047 -GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 | || |||| || || || |||| | | || || ||| || ||||| |||| Sbjct 31472899 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 31472840 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| || | || |||||| | | || | || | || ||||||||||| || || Sbjct 31472839 CCACAAATCAAGTTCAGTTAAATCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCGCC 31472780 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 ||||||||||| | |||||||| || ||||| || || | ||||||||||| || Sbjct 31472779 AGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 31472720 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 ||| ||||| || || ||||| || ||||| || || | | |||| |||||| | ||| Sbjct 31472719 CAATATTTGCGCTGTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 31472660 Query 53284 GTATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 53341 || ||| | | | || ||||| ||| | ||| | ||||||||| | ||| Sbjct 31472659 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATTTG 31472602 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 53400 || | ||| || || || | | || || || || || || || Sbjct 31472601 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACGTAAGTCTCATA 31472543 Query 53401 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460 |||||| || ||| ||| | ||||||||| || || || || || || || || ||||| Sbjct 31472542 TGGTCCATCTCTCTGAGCCAATTCACAACTGGCTTCCAAAGCTCCATAGTATATAGTTTC 31472483 Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 53520 ||| |||| || ||||| |||||| | || || | | ||| | | || Sbjct 31472482 GAAAATCTGCTGATTTAATAGAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 31472423 Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 || ||||| || || ||||| || |||||||| ||||| | || | |||||| | Sbjct 31472422 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTAGATTT 31472363 Query 53581 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAAT 53640 || ||||||||| | ||| || ||||| ||||| || |||||||| | |||| | || Sbjct 31472362 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 31472303 Query 53641 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACA 53696 | ||| ||||| || || || ||| ||| | || ||| | | ||||||| Sbjct 31472302 GATTTTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCG-TCACAAACA 31472244 Query 53697 TGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 53756 | || | ||| || || |||| |||||| || |||| |||| | ||| ||||| | Sbjct 31472243 TATTAAGTGCGATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAA 31472184 Query 53757 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 53816 ||| || ||||| |||||||| || || || ||||| | ||||||||| || || ||| Sbjct 31472183 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 31472124 Query 53817 TGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAA 53876 ||||||| | |||||| | | ||| | || |||||||| || | || ||||| || | Sbjct 31472123 TGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCGATGA 31472064 Query 53877 TCGCTTTCCAGACGACAC-GAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCT--TTCG 53932 | || ||| | || | |||| || || | | |||| | ||| | |||| ||| Sbjct 31472063 TGGCAAACCAAA-GAGATTGAGCTTTAATAACTCGATTCG---CTCGTCCCTCTCGTTCA 31472008 Query 53933 TATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 53992 ||| |||| | |||||| || || |||||||||| | ||||| |||| | Sbjct 31472007 TATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTA 31471948 Query 53993 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 54052 | ||||||||||| ||||| ||| | | | | | || ||||||||||| |||||||| Sbjct 31471947 TGTGGACACATCAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGT 31471888 Query 54053 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 54112 ||||| | || | ||| ||||| | | | ||||||||| ||||| ||||| |||||| Sbjct 31471887 ATCCACAATGCAAAAAAGAGATCGCGTGCACGATGTTCCTCCTTTCCAGTATTTTTTTTA 31471828 Query 54113 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCA 54172 || || | || | | | ||| || ||||| || |||| ||||| | | ||||| Sbjct 31471827 AGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAGATATATAGCAAATGCTCCA 31471768 Query 54173 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 54232 || | ||| || |||||||| | || | ||| |||||| | ||||| |||||| Sbjct 31471767 GGTCTTTTACCACCGCCCTGATCAACATAGCGCGCGACATTATTAAATACTCTTAACATT 31471708 Query 54233 GG-AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 54291 || | |||| ||||| || | || || || || | || || | || | || ||||| Sbjct 31471707 GGTACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAAT 31471649 Query 54292 ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 54351 | || || || || || |||||| || || || | ||||||| ||| | Sbjct 31471648 ACAGTGAACATTAAGTCCAATTCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAAC 31471589 Query 54352 CGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACA 54410 | | | | || || || || |||| || || ||||| |||||||| ||||| Sbjct 31471588 TGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACA 31471530 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 ||| ||||| | || | ||| ||| | || || || || || ||||| | | Sbjct 31471529 ATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCT 31471470 Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 54530 |||| || | |||||| || || | || || || ||||| ||| || |||| | Sbjct 31471469 CAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGG 31471410 Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGT 54590 |||||||||||| || ||||| |||||||| | || || |||||||| ||||| | Sbjct 31471409 CGACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAAT 31471350 Query 54591 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 54650 | || || | || || || ||||| ||||| ||| || || || || || |||| Sbjct 31471349 ACGACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAA 31471290 Query 54651 TAACTGAGTT 54660 || | ||||| Sbjct 31471289 TAGCAGAGTT 31471280 >seq6839 Length=26866924 Score = 197 bits (218), Expect = 2e-45 Identities = 555/844 (66%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 23835 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 23894 || ||||| ||| ||||| || || ||| ||||| || ||||| || || || | Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 23895 GATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAAT 23954 || || | ||||| || | ||||||| | ||| |||||| | || || | | Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3409534 Query 23955 TCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATT 24014 || | || | ||| || ||||| || ||||| ||||| | |||||||||| Sbjct 3409535 TCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATG 3409594 Query 24015 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 24074 || || | || || || ||||| | || ||||| ||||| ||||| | || || || Sbjct 3409595 CCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCC 3409654 Query 24075 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 24130 | || ||||| | || | | |||| | || | | || ||||| ||||| Sbjct 3409655 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3409710 Query 24131 CAA-ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 24189 || ||| || || || || || | |||||||| | || || || ||||| || | Sbjct 3409711 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3409769 Query 24190 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 24249 | || |||||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 3409770 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3409829 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--CTGTC 24307 |||| ||||| || || || || || ||||| | ||| || ||| | ||| || Sbjct 3409830 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTCG 3409889 Query 24308 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 ||| | |||| | |||||||||||||| || ||| |||||||| || | | Sbjct 3409890 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGG 3409949 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 |||| || ||||| | ||| | ||| ||| ||||||||| |||| | || | Sbjct 3409950 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3410009 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| ||||| || | || || ||||| |||||||| || |||||||| | ||| |||| Sbjct 3410010 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3410069 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 | || || || || | || || || | | ||| ||||| || || || || | Sbjct 3410070 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAG 3410129 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA---- 24602 | ||||| || || | ||||| ||||| | |||| | | |||| | Sbjct 3410130 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGGCGCTCGT----TATCAGTTAAACGT 3410185 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 ||| || | | || ||||| | |||||| || ||||| ||||| ||||| ||||| Sbjct 3410186 GCCCAGTCGGTCAAGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCG 3410245 Query 24663 GCCT 24666 |||| Sbjct 3410246 GCCT 3410249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593670829381680