Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6838 102 7e-17 seq6836 89.7 4e-13 seq5292 84.2 2e-11 >seq6838 Length=24764193 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||||||||| ||| || ||| || | Sbjct 2124492 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2124551 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || || |||||| | ||| |||||| Sbjct 2124552 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 2124611 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || ||||| |||||||||||| | || || | |||||||| Sbjct 2124612 CAGCGTCTGATCTTCGCTGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGATTACAAC 2124671 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || |||||| |||| Sbjct 2124672 ATCCAGAAGGAATCGACCCTTCACTTGGT 2124700 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||||||||| ||| || ||| || | Sbjct 2124264 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2124323 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| || || |||||| | ||| |||||| Sbjct 2124324 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAG 2124383 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || ||||| |||||||||||| | || || | |||||||| Sbjct 2124384 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACCTTGTCTGATTACAAC 2124443 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||| || || ||| |||| Sbjct 2124444 ATTCAGAAGGAATCGACCCTCCACTTGGT 2124472 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||||||||| ||| || ||| || | Sbjct 2122668 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2122727 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| || || |||||| | ||| ||| ||| Sbjct 2122728 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAA 2122787 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | |||||||| || ||||| |||||||||||| || || | || |||||| Sbjct 2122788 CAGCGTCTTATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAAT 2122847 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || ||||| |||| Sbjct 2122848 ATCCAGAAGGAATCGACCCTTCATCTGGT 2122876 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||||||||| ||| || ||| || | Sbjct 2123124 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2123183 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || || |||||| | ||| ||| || Sbjct 2123184 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 2123243 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || ||||| |||||||||||| || || | |||||||| Sbjct 2123244 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGATTACAAC 2123303 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||| || ||||| |||| Sbjct 2123304 ATTCAGAAGGAATCGACCCTTCATCTGGT 2123332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||||||||| || || ||| || || Sbjct 2123352 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACTCTGGAGGTGGAGCCATCA 2123411 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| ||||| |||||| | ||| |||||| Sbjct 2123412 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATTCCCCCAGATCAG 2123471 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || ||||| |||||||||||| || || | || |||||| Sbjct 2123472 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAAT 2123531 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || ||||| |||| Sbjct 2123532 ATCCAGAAGGAATCGACCCTTCATCTGGT 2123560 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||| ||||| ||| || ||| || | Sbjct 2124036 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 2124095 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || || |||||| | ||| ||| || Sbjct 2124096 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 2124155 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | |||||||| || ||||| |||||||||||| || || | |||||||| Sbjct 2124156 CAGCGTCTTATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGATTACAAC 2124215 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||| || ||||| |||| Sbjct 2124216 ATTCAGAAGGAATCGACCCTTCATCTGGT 2124244 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||| ||||| || || ||| || || Sbjct 2122440 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCA 2122499 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| ||||| |||||| | ||| |||||| Sbjct 2122500 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTATTCCCCCAGATCAG 2122559 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || ||||| |||||||||||| || || | || |||||| Sbjct 2122560 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAAT 2122619 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || ||||| |||| Sbjct 2122620 ATCCAGAAGGAATCGACCCTTCATCTGGT 2122648 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||| ||||| || || ||| || | Sbjct 2124720 ATGCAAATCTTCGTTAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCC 2124779 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | ||| || ||| || || |||||| | ||| ||| || Sbjct 2124780 GACACGATTGAAAACGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 2124839 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | |||||||| || ||||| |||||||||||| || || | |||||||| Sbjct 2124840 CAGCGTCTTATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGATTACAAC 2124899 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||||||||| || || ||| |||| Sbjct 2124900 ATTCAGAAGGAATCGACCCTCCACTTGGT 2124928 >seq6836 Length=4525533 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| ||||||||||| ||| || || ||| | Sbjct 2204856 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAGCCCTCG 2204797 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || || || || ||| | ||| |||||| Sbjct 2204796 GACACCATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 2204737 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || ||||| || ||||| ||| ||| || |||| ||||| Sbjct 2204736 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2204677 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| |||||| | ||| ||||| | || |||| || || Sbjct 2204676 ATCCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGTCTACGTGGTGG 2204630 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| ||||||||||| ||| || |||||| | Sbjct 2205540 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAAACCATCACCTTGGAGGTCGAACCCTCG 2205481 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || || || || ||| | ||| ||||||| Sbjct 2205480 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAA 2205421 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || ||||| || ||||| ||| ||| || |||| ||||| Sbjct 2205420 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 2205361 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || |||||||| || || ||||| |||| Sbjct 2205360 ATCCAGAAGGAGTCGACCCTTCATCTGGT 2205332 >seq5292 Length=4599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || |||| ||||| ||||| || || ||| || | Sbjct 254 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCTTCC 313 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| || || |||||| | ||| ||| || Sbjct 314 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 373 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || ||||| || ||||| |||||||||||| | ||| || | || |||||| Sbjct 374 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCACTTTGTCTGACTACAAT 433 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || || ||| |||| Sbjct 434 ATCCAGAAGGAATCGACCCTCCACTTGGT 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428300287619855