Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6839 105 1e-17 >seq6839 Length=26866924 Score = 105 bits (116), Expect = 1e-17 Identities = 171/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 202760 ACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGGT 202819 ||||| || || || | || |||| ||| ||||||| | ||| ||||||||||| | Sbjct 677743 ACATCGAACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCAAATATCGCG 677684 Query 202820 CTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCCAACATATCCA 202879 | || ||||| || || ||||| |||| || |||||||| || ||||| || ||| Sbjct 677683 CGCTCCTTCCAGCCTTGGTCGTGAATCCCACCGATGGACCACATGCAACCAACGTAGCCA 677624 Query 202880 TTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNNNAATGCT 202939 || ||||| |||||||| | | || || || || || | ||| Sbjct 677623 TTCGGATCGCGTCCATCCAGACTGTACTTGTCGTTCAATAATATGCTATACTCAAGCGCT 677564 Query 202940 TCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATATCCA 202999 | ||| || | || ||||| ||||| || ||||| ||||||||||| | | | | || Sbjct 677563 TGTTCCGGCGTTTCGGTCCACTCTAAAATCTTTTTGGCCCAATACATGCGCAGAAACCCG 677504 Query 203000 TGCATTTTACC 203010 |||||||| || Sbjct 677503 TGCATTTTGCC 677493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755391399068800