Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq6839 174 1e-38 >seq6839 Length=26866924 Score = 174 bits (192), Expect = 1e-38 Identities = 580/895 (65%), Gaps = 12/895 (1%) Strand=Plus/Plus Query 15881 TAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGAC 15940 ||| |||| ||||| ||| || | ||| ||||| ||| ||| || | || | Sbjct 3409361 TAATTTTAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCC 3409420 Query 15941 ATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATA 16000 || ||||||||| | |||| | || || ||||| || || || || || | || || Sbjct 3409421 ATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATC 3409480 Query 16001 TTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC 16060 | |||||||| || ||||| || | | ||| ||| | || | ||||| | Sbjct 3409481 ATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACC 3409540 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || | | |||||| |||||||| |||||||| ||| || |||| ||||| || || Sbjct 3409541 AACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATGCCAATC 3409600 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 || || || || | || ||||| | ||| | || || || |||| || || ||| Sbjct 3409601 AAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATG 3409660 Query 16181 ATATCTCTTACTACACTATTTAACGG--AGG--GTTTAAT-AAGTGTTTAAACATTATAC 16235 || || | | | | || |||| ||| ||| | || || ||||| || Sbjct 3409661 ATCTCAATGA-TGCGCTC----ACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCA 3409715 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 |||||| ||||||||||| || ||||| | || ||||| || || || || |||| Sbjct 3409716 CAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGAC 3409775 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 | ||||| || || ||||| || | |||||| || | |||||| ||| |||||| | Sbjct 3409776 CGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGA 3409835 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC-TAtttttactttct 16414 | || || || || || || |||| | || ||| || | |||| || | Sbjct 3409836 TTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCC-AAAGTTCGCGGCCTTCGATGAA 3409894 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| ||||||| || ||| | || ||| | ||| | || | ||||| Sbjct 3409895 ATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGGCATTG 3409954 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | ||||| ||| | ||| |||||| ||||| || || | || ||||| Sbjct 3409955 AACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATC 3410014 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || || || | ||||||||| || || ||||| ||||| || || | |||||||| |||| Sbjct 3410015 TCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATT 3410074 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || || || | || | || | | || || ||||| || |||||| ||| ||| Sbjct 3410075 TGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAGCGGCA 3410134 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCA 16714 || || || || | || ||||| | |||||||| | | | |||||| Sbjct 3410135 AAGAAGGCGAGCACATGGGAGATAAAGTGGCGCTCGTTATCAGTTAAACGTGCCCAGTCG 3410194 Query 16715 GAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 | || || || || | ||| ||||| || |||||||| || || || | |||| Sbjct 3410195 GTCAAGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGCCT 3410249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462472449442600