Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq6839 147 2e-30 >seq6839 Length=26866924 Score = 147 bits (162), Expect = 2e-30 Identities = 538/831 (65%), Gaps = 20/831 (2%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 |||||||| ||||||||| | |||| |||| || ||||||||||| || || ||||| Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 13964 GATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 14023 || || | |||||||| |||||||| | | | | | ||| || ||| ||| Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3409534 Query 14024 TCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATA 14083 || | | | | |||||||| || |||||||| || ||||| || |||||||||| Sbjct 3409535 TCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATG 3409594 Query 14084 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 14143 || || | || || || | || || | ||| |||| || || | ||||| || Sbjct 3409595 CCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC- 3409653 Query 14144 TTTATAATAATCGTAATAAT---TTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 14200 || ||| ||| || ||| |||| | | | ||| || || Sbjct 3409654 --CGAGATGATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATC 3409711 Query 14201 A-AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 14259 | ||| ||||| |||||||| | |||||| || | || | || || || || || Sbjct 3409712 ATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGT 3409770 Query 14260 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 14319 | || ||||||| || ||||| || | |||||| || | || || || ||| Sbjct 3409771 CAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAA 3409830 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA---CGATGCTTTTTT 14376 ||| |||||||| || ||||| ||||| || | || || ||||| || || || Sbjct 3409831 GAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGC--CTTC 3409888 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 | | || ||||| ||||| || | ||| || | | ||||||||||| Sbjct 3409889 GAT-GAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAAC 3409947 Query 14437 AGCATTAAATAAATGTTCC--TTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAA 14493 ||||| || | || ||| ||| || | | | | | ||| |||||||| || || | Sbjct 3409948 GGCATTGAACAGATAATCCCGTTC-CTGTGGATCCCT--AATATATGTATCGATCAGCAC 3410004 Query 14494 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGC 14553 ||| ||||| || ||||| | || ||||| || || ||||| ||||| ||||| | ||| Sbjct 3410005 GCTGTACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGC 3410064 Query 14554 TTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14613 ||| | ||| ||||| | || | ||| | | ||| |||||||| || ||||| Sbjct 3410065 TTCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATC 3410124 Query 14614 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT 14673 ||| ||||| || || | | | ||||||| |||| | || | | Sbjct 3410125 GGAAGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGGCGCTCGTTATCAGTTAAACG 3410184 Query 14674 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 | ||| |||| || |||||||| ||||| || || || || ||||| || Sbjct 3410185 TGCCCAGTCGGTCAAGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAA 3410235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482304353421880