Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6838 86.0 5e-12 seq5292 86.0 5e-12 >seq6838 Length=24764193 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155 || || || || || | ||||||| ||||| || || || ||||||||||||||||| Sbjct 2125177 TAACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA 2125118 Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215 | || || || |||||||| ||| ||||| ||| |||| || | || ||||| | Sbjct 2125117 GACAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 2125058 Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 || | |||||||| || ||| | ||| || | ||| || || ||||| Sbjct 2125057 GGAATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 2124998 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| |||| || || || || |||||||| Sbjct 2124997 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2124948 >seq5292 Length=4599 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155 || || || || || | ||||||| ||||| || || || ||||||||||||||||| Sbjct 1851 TAACCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA 1792 Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215 | || || || |||||||| ||| ||||| ||| |||| || | || ||||| | Sbjct 1791 GACAGGGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGG 1732 Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 || | |||||||| || ||| | ||| || | ||| || || ||||| Sbjct 1731 GGAATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCC 1672 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| |||| || || || || |||||||| Sbjct 1671 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379312372312545