Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq6839 150 4e-31 seq6840 129 1e-24 >seq6839 Length=26866924 Score = 150 bits (166), Expect = 4e-31 Identities = 300/442 (68%), Gaps = 7/442 (2%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| || ||||| || || ||||||||||||||||| || || || || || ||| Sbjct 3409859 TTGCGTTCGCTGCCGTGGAGGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGC 3409800 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| | |||| ||||| |||| |||||||||||| || || | |||| Sbjct 3409799 TGAAGAAACGTGGTCTGATGCCCGGTCTGACCTTCTCCAATGAGTTGATCTCACGCGACG 3409740 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC--CCC 102096 | || | ||| | |||||||| ||| |||| || |||| || || || Sbjct 3409739 AGGGCTTGCATTGTGACTTTGCTGTGATGATGTT----CCGGCATTTGGTGCAACGTCCT 3409684 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 | | | || | || |||| || || | || || || ||||| ||||| ||||| Sbjct 3409683 AGC-CGTGAGCGCATCATTGAGATCATCTCGGATGCTGTTACCATTGAGCAAGAGTTTCT 3409625 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 ||||| | | ||||| || || || | || ||||| || |||||| |||||| || Sbjct 3409624 CACAGATGCTCTGCCCGTCAACTTGATTGGCATGAATTGTGCATTGATGTCCCAGTATAT 3409565 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 ||||||||| || ||| || ||||| ||| | || | | || ||| ||| | Sbjct 3409564 TGAATTTGTTGCGGATCGTCTGTTGGTGGAACTCGGTGTTGGCAAAATCTACAATACGAA 3409505 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 || || ||| | || ||||| | || || || || ||||| ||||| || || || Sbjct 3409504 GAATCCATTCACCTTTATGGAGATGATCTCGCTGGATGGCAAGACTAACTTCTTCGAGAA 3409445 Query 102337 GAGAGTCGCCGAGTATCAACGT 102358 | ||| | ||| ||||||||| Sbjct 3409444 AAAAGTTGGCGAATATCAACGT 3409423 >seq6840 Length=32352404 Score = 129 bits (142), Expect = 1e-24 Identities = 412/630 (65%), Gaps = 17/630 (3%) Strand=Plus/Minus Query 35168 GGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCA 35227 || || | ||||||||| || |||||||| | ||| ||| || ||| | | ||| Sbjct 15164784 GGTACCCGATCCATTTTCGGCGCCCAAATGCGCTTCAATCTACG---CGATTCGTTCCCA 15164728 Query 35228 GTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATC 35287 | || || |||||| | |||| | ||||| | || || || |||||||| Sbjct 15164727 TTGCTGACCACCAAGCGCGTCTTCTTTCGGGGAGTGGCCGAGGAGCTGATCTGGTTCATT 15164668 Query 35288 AGGGGCAATACAGACGCCAAAGAATTGGCCA-AGAAGAAGATACACATCTGGAACGCTAA 35346 || | ||||| || ||||| || ||||||| |||||||| ||| | | ||| Sbjct 15164667 GCTGGGCAGACAGATGC-AAAGATCCTGCAGGAGAAGAATATACACATATGGGATGGTAA 15164609 Query 35347 TGGGTCGCGGGAATTTTTGGACAGTAGAG-GGTTATACG-ATAGAGCAGAGGGAGATTTG 35404 | | | || || ||| | |||| || | || | ||| || | | | ||| ||| || Sbjct 15164608 TAGCACTCGCGAGTTTCTCGACA--AGTGTGGCCACACGGATCGCGAGGTGGGTGATCTG 15164551 Query 35405 GGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCC 35464 || || ||||| || ||||| |||||||| ||||| || |||||| || || | | Sbjct 15164550 GGTCCAGTATATGGCTTCCAGTGGCGTCACTTTGGCGCAAAATATGGTAAATGCACCGAC 15164491 Query 35465 GATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAAT 35524 || || || || ||||||||||||| || | | | | || | | | || Sbjct 15164490 GACTACACCGGCCAGGGTATTGATCAGCTGAAACAGGTCATCGATACTATACGCAACGAT 15164431 Query 35525 CCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCT 35584 || | ||| | | || || ||| | |||||||||||| |||| | | || ||||| Sbjct 15164430 CCGGCGGATCGTCGCATCATAATGTCCGCATGGAATCCTTTGGACATACCCCAAATGGCG 15164371 Query 35585 CTTCCTCCATGCCACATGACT-GCTCAATTTTATGT------GGCTAATGGAGAATTGTC 35637 | || || |||||| || || || || || ||||| | | ||| |||||||| Sbjct 15164370 TTGCCGCCGTGCCAC-TGCCTGGCGCAGTTCTATGTTTCGCAGTCGCGTGGTGAATTGTC 15164312 Query 35638 GTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATC 35697 ||||| |||||||||| |||| || | || |||| ||||| ||||| || || || Sbjct 15164311 CTGCCAACTGTATCAGCGCAGCGCCGACATGGGTCTGGGAGTGCCTTTCAACATCGCCTC 15164252 Query 35698 ATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTAT 35757 || | | |||| | |||| ||| | || ||| | || || || || ||| | Sbjct 15164251 GTATGCCTTGTTGACCTACATGATCGCCCATGTGACGGGCTTGAAGCCCGGCGATTTTGT 15164192 Query 35758 CCTCACTCTTGGTGACGCACACATTTATAA 35787 || || || || || || ||| | ||||| Sbjct 15164191 CCATACGCTGGGCGATGCTCACGTCTATAA 15164162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989497262653155