Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6840 571 7e-158 seq6839 212 8e-50 >seq6840 Length=32352404 Score = 571 bits (632), Expect = 7e-158 Identities = 1256/1866 (67%), Gaps = 20/1866 (1%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 31473138 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 31473079 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || ||||| |||||||| || |||| ||| |||| | || || |||| | Sbjct 31473078 CCCGCTTTCCATGAATAAAAATGGATTGATGTTAATTTTCCATAATTGGGTTCAGCTACA 31473019 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || ||||| | ||| ||||||||||| || || ||||| || || || ||||||||||| Sbjct 31473018 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 31472959 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62284 | | || || ||||||||| | ||||||||| || || | ||| |||| |||| Sbjct 31472958 GTTGATTTAACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 31472900 Query 62285 -GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 | || |||| || || || |||| | | || || ||| || ||||| |||| Sbjct 31472899 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 31472840 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| || | || |||||| | | || | || |||| |||||||| || || || Sbjct 31472839 CCACAAATCAAGTTCAGTTAAATCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCGCC 31472780 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 ||||||||||| | |||||||| || ||||| || || | |||||||||||| || Sbjct 31472779 AGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 31472720 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 ||| ||||| || || ||||| || ||||| || || | | |||| |||||| | ||| Sbjct 31472719 CAATATTTGCGCTGTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 31472660 Query 62522 GTATGTTCTGATTTT-ATCTTTTA-GATGTTCCCAATTCCAAAGATCCGACGGTACAACA 62579 || ||| | | | || ||||| || | ||| | ||||||||| | ||| Sbjct 31472659 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATTTG 31472602 Query 62580 NNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATA 62638 ||| || | ||| || || || | | || || || || || ||||| Sbjct 31472601 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACGTAAGTCTCATA 31472543 Query 62639 TGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62698 |||||| || ||| ||| | || |||||| || || || || || || || || ||||| Sbjct 31472542 TGGTCCATCTCTCTGAGCCAATTCACAACTGGCTTCCAAAGCTCCATAGTATATAGTTTC 31472483 Query 62699 AAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAAT 62758 || |||| || ||||| |||||| | || || | | ||| | | || Sbjct 31472482 GAAAATCTGCTGATTTAATAGAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 31472423 Query 62759 AAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62818 || |||||||| || ||||| || |||||||| ||||| | || | |||||| | Sbjct 31472422 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTAGATTT 31472363 Query 62819 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 62878 || ||||||||| | ||| || ||||| ||||| || |||||||| | ||| | || Sbjct 31472362 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 31472303 Query 62879 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACAT 62935 | ||| ||||| || || || ||| ||| | | | | | | |||||||| Sbjct 31472302 GATTTTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACAT 31472243 Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995 || | ||| | || |||| ||||||||| |||| |||| | ||| ||||| | Sbjct 31472242 ATTAAGTGCGATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAAC 31472183 Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 ||| || ||||| |||||||| || || |||||||| | ||||||||| || || ||| | Sbjct 31472182 TATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCT 31472123 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 |||||| | |||||| | | ||| | ||||||||||| || | |||||||| || || Sbjct 31472122 GTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCGATGAT 31472063 Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCCTTTCTCTTTCGTATA 63174 || ||| | | |||| || || | | |||| | ||| | ||| ||| ||| Sbjct 31472062 GGCAAACCAAAGAGATTGAGCTTTAATAACTCGATTCGCTCGTCCCT-CTCGTTCATATT 31472004 Query 63175 GAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCG 63234 |||| | ||| || || || |||||||||| | | ||| |||| || | Sbjct 31472003 TGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTG 31471944 Query 63235 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294 |||||||||| ||||| ||| | | | | | || ||||||||||| |||||||| |||| Sbjct 31471943 GACACATCAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCC 31471884 Query 63295 AAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354 | | || | ||| ||||| | || | ||||||||| ||||| ||||| |||||||| | Sbjct 31471883 ACAATGCAAAAAAGAGATCGCGTGCACGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGT 31471824 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 | | || | | | ||| || ||||| || |||| ||||| || | ||||||| | Sbjct 31471823 CCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAGATATATAGCAAATGCTCCAGGTC 31471764 Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-A 63473 ||| || |||||||| | || | ||| |||||| | ||||| |||||||| | Sbjct 31471763 TTTTACCACCGCCCTGATCAACATAGCGCGCGACATTATTAAATACTCTTAACATTGGTA 31471704 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 |||| || ||||| | || || || || | || || || | || |||||| Sbjct 31471703 CTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACAG 31471645 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 || || || ||||| |||||| || || || | ||||||| ||| | | Sbjct 31471644 TGAACATTAAGTCCAATTCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGAT 31471585 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTG 63652 | | | || ||||| || |||| | || ||||| |||||||| ||||| ||| Sbjct 31471584 TTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTG 31471526 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 ||||| | || | ||| ||| | || || || || || ||||| | ||||| Sbjct 31471525 TGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGA 31471466 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 || | |||||| || |||| || || || ||||| ||| || |||| ||||| Sbjct 31471465 TAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGAC 31471406 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||||| || ||||| |||||||| | ||||| |||||||| | ||| || || Sbjct 31471405 ACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGA 31471346 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 || | || || || ||||| ||||| ||| || || || || || |||||| | Sbjct 31471345 CCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGC 31471286 Query 63893 CGAATT 63898 || || Sbjct 31471285 AGAGTT 31471280 >seq6839 Length=26866924 Score = 212 bits (234), Expect = 8e-50 Identities = 558/843 (66%), Gaps = 19/843 (2%) Strand=Plus/Plus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 || ||||| ||| ||||| || || ||| ||||| || ||||| || || |||| Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || | ||||| || || ||||| | |||||| ||||| || || | | Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3409534 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | || | ||| || || ||||| ||||| ||||| | |||||||||| Sbjct 3409535 TCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATG 3409594 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || | || || || ||||| | || ||||| ||||| ||||||| || |||| Sbjct 3409595 CCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCC 3409654 Query 33522 GTTATAATAAATCTAACGGTTTCTTCAC---TCGGTGGATGTAATAAATGTTTAAACATC 33578 | || || || || | | |||| | || | || | ||||| |||||| Sbjct 3409655 GAGATGATC--TC-AATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATC 3409711 Query 33579 AA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 | ||| || || || || |||| |||||||| | || || || || || || || Sbjct 3409712 ATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGT 3409770 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 || |||||||| || ||||| || || |||||||| || || || || || ||| Sbjct 3409771 CAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAA 3409830 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCA 33755 ||||||||| || || ||||| || ||||| | |||||| ||| | ||| || | Sbjct 3409831 GAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTCGA 3409890 Query 33756 TGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 || | |||| | |||||||||||||| || ||| ||||| ||||| | ||| Sbjct 3409891 TGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGGC 3409950 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||| || ||||| | ||| | ||| ||| ||| |||||||||| | || || Sbjct 3409951 ATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTA 3410010 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||| ||||| || | || || ||||| || ||||| || |||||||| | ||| ||||| Sbjct 3410011 CATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGT 3410070 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 || ||||| || | || || || | | ||| ||||| || || ||||| || Sbjct 3410071 TATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAGC 3410130 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA----T 34050 ||||| || || | ||||| ||||| | |||| | | |||| | Sbjct 3410131 GGCAAAGAAGGCGAGCACATGGGAGATAAAGTGGCGCTCGT----TATCAGTTAAACGTG 3410186 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| || | | || ||||| | |||||| || ||||| ||||| ||||| ||||| | Sbjct 3410187 CCCAGTCGGTCAAGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGG 3410246 Query 34111 CCT 34113 ||| Sbjct 3410247 CCT 3410249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629763742722480