Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6840 473 1e-128 >seq6840 Length=32352404 Score = 473 bits (524), Expect = 1e-128 Identities = 1234/1861 (66%), Gaps = 32/1861 (2%) Strand=Plus/Minus Query 36793 ACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTT 36852 || ||||||| ||||| ||| | || | |||||| | | ||||||||| || || || Sbjct 31473141 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 31473082 Query 36853 AGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCT 36912 || ||| | ||||| |||||||| || || | |||| | || | || | | || Sbjct 31473081 AGACCCGCTTTCCATGAATAAAAATGGATTGATGTTAATTTTCCATAATTGGGTTCAGCT 31473022 Query 36913 ATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTT 36970 | || |||||| | || ||||||||||| |||||||| ||||| || || ||||||| Sbjct 31473021 ACATGAATATTGAAA--GACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTT 31472964 Query 36971 CTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTG 37030 || | | |||| || || ||||| || |||||||| | | || | | | Sbjct 31472963 TTATAGTTGATTTAACTGAAATTTCCCACACAGTTTTATACAAATCACGAATTTCTTTAG 31472904 Query 37031 GTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCAT 37087 | | | || | || ||| || |||||| | | | | ||| ||| || || || | Sbjct 31472903 GAATAGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGT 31472844 Query 37088 TATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 || ||||| || | | || ||| || | | || ||| | || || || ||||| Sbjct 31472843 CATCCCACAAAT--CAAGTTCAGTTAAATCACGGAGTAAGTGGTGGTTCACTACTTGAAA 31472786 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||| ||||||| |||||| || || || |||||| || || | |||||||| Sbjct 31472785 CTCGCCAGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATT 31472726 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 ||| | |||||||| | ||||||||| |||||||| || || || || | |||||| Sbjct 31472725 ATTGCCCAATATTTGCGCTGTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCT 31472666 Query 37266 CAATCCATGTG----TATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | || ||| ||| ||| |||| || ||||||| ||||| | |||||||| Sbjct 31472665 GACACCGTGTTGCGCTATAGATT----TTTTAAGAGCATTCCAGTCCCAAAGATCTGTTG 31472610 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | || |||||||||||| || | ||| ||||| || ||||| | || | Sbjct 31472609 GTGATTTGTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTGCCAACGTAAG 31472550 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 ||||||| ||||| | | | ||| | ||| ||||| | ||| | || |||| |||| Sbjct 31472549 TCTCATATGGTCCATCTCTCTGAGCCAATTCACAACTGGCTTCCAAAGCTCCATAGTATA 31472490 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | ||||||||||| || |||||||| |||||| || ||| | | ||| | || Sbjct 31472489 TAGTTTCGAAAATCTGCTGATTTAATAGAAATGCTTCACGACTTTCGTAGGAATACCGCA 31472430 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 |||||| || | || || || || || || || ||||| || || | || || Sbjct 31472429 TTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAAT 31472370 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 ||||| | | |||| || || || ||||| ||||| ||||||||||||| |||| Sbjct 31472369 TAGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTT 31472310 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAA-ATACGTTATTATTAA 37678 | | ||||| || | | | | ||| | || ||||| || | | | | Sbjct 31472309 TCGTAACGATTTTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCA 31472250 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 |||| || | | | || || | | |||||| ||||| | ||||||| || | || Sbjct 31472249 CAAACATATTAAGTGCGATTGACGCCAAATTACACACAGCTATTTCATCTG-GTGCCGAA 31472191 Query 37739 -ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797 ||| | || ||||| || |||||||| || | || ||||| | ||| ||| ||| Sbjct 31472190 TATTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTG 31472131 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 |||| | |||||||| || ||| ||| || || || || || |||| ||||| Sbjct 31472130 CTTTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGAT 31472071 Query 37858 TCGATAATAGATTTCCATAAACTTCTTGCTTTAACGA-TCGCTTTAAtttttttCTTTGT 37916 ||||| || | ||| | | | ||||||| | ||| || | | || | Sbjct 31472070 TCGATGATGGCAAACCAAAGAGATTGAGCTTTAATAACTCGATTCGCTCGTCC-CTCTCG 31472012 Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976 ||| |||| ||||| | || | |||||| | ||||| ||||| | || || || Sbjct 31472011 TTCATATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCA 31471952 Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036 || ||||||||| | ||||| ||||||| ||| || |||| |||||| | ||| Sbjct 31471951 TTTATGTGGACACATCAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATC 31471892 Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096 ||||| ||| |||||| ||| | ||| | | || ||| || || || ||| || Sbjct 31471891 AGGTATCCACAATGCAAAAAAGAGATCGCGTGCACGATGTTCCTCCTTTCCAGTATTTTT 31471832 Query 38097 TCTTAAGCTTAGAAAAT-CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155 | ||||| | ||||| |||| | ||| | |||||| || || | ||| || | | || Sbjct 31471831 T-TTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAGATATATAGCAAATG 31471773 Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTA 38215 |||| ||||||||| |||| ||||||| || ||| | | |||||| ||| ||||| Sbjct 31471772 CTCCAGGTCTTTTACCACCGCCCTGATCAACATAGCGCGCGACATTATTAAATACTCTTA 31471713 Query 38216 ACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTC 38275 |||| ||||||| ||||| || ||||||| | || | || | || || ||||||| Sbjct 31471712 ACATTGGTACTAATCCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTC 31471653 Query 38276 GTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334 | ||| | | | | || ||| ||||||||||| |||||||| | ||||||||| Sbjct 31471652 GAATAC-AGTGAACATTAAGTCCAATTCCACCTGCCGACTTTGATATCATTGCGCATTGT 31471594 Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 | | | | ||| || ||||| || ||| | ||| | || | |||||| | Sbjct 31471593 TCAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAAAGAAAACATGAA 31471534 Query 38395 GACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 |||| ||| || | || || | || ||| | || || |||||||| | || | Sbjct 31471533 GACAATTGTGGACGATTT-GTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAA 31471475 Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 || || | |||| || ||||| | | || ||| ||||| |||| || ||||| Sbjct 31471474 ACGCTCAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACC 31471415 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAG 38573 || | || | |||||||| ||| |||||||||||| |||||| ||| ||| || Sbjct 31471414 TATGGCGACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAG 31471355 Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 | |||||| || | ||| || | |||||| || ||||| |||| | ||| || Sbjct 31471354 CAAATACGACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATA 31471295 Query 38634 T 38634 | Sbjct 31471294 T 31471294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468484735273040