Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6840 560 1e-154 seq6839 212 8e-50 >seq6840 Length=32352404 Score = 560 bits (620), Expect = 1e-154 Identities = 1254/1868 (67%), Gaps = 24/1868 (1%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 31473138 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 31473079 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || ||||| |||||||| || |||| ||| |||| | || || |||| | Sbjct 31473078 CCCGCTTTCCATGAATAAAAATGGATTGATGTTAATTTTCCATAATTGGGTTCAGCTACA 31473019 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || ||||| | ||| ||||||||||| || || ||||| || || || ||||||||||| Sbjct 31473018 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 31472959 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 65077 | | || || ||||||||| | ||||||||| || || | ||| |||| |||| Sbjct 31472958 GTTGATTTAACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 31472900 Query 65078 -GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 | || |||| || || || |||| | || || || ||| || ||||| |||| Sbjct 31472899 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 31472840 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||| || | || |||||| | | || | || | || ||||||||||| || || Sbjct 31472839 CCACAAATCAAGTTCAGTTAAATCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCGCC 31472780 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 ||||||||||| | |||||||| || ||||| || || | ||||||||||| || Sbjct 31472779 AGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 31472720 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 ||| ||||| || || ||||| || ||||| || || | | |||| |||||| | ||| Sbjct 31472719 CAATATTTGCGCTGTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 31472660 Query 65315 GTATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACN 65372 || ||| | | | || ||||| ||| | ||| | ||||||||| | ||| Sbjct 31472659 GT--GTTGCGCTATAGATTTTTTAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATTTG 31472602 Query 65373 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTA 65431 || | ||| || || || | | || || || || || || || Sbjct 31472601 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG-CCAACGTAAGTCTCATA 31472543 Query 65432 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491 |||||| || ||| ||| | ||||||||| || || || || || || || || ||||| Sbjct 31472542 TGGTCCATCTCTCTGAGCCAATTCACAACTGGCTTCCAAAGCTCCATAGTATATAGTTTC 31472483 Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAAT 65551 ||| |||| || ||||| |||||| | || || | | ||| | | || Sbjct 31472482 GAAAATCTGCTGATTTAATAGAAATGCTTCACGACTTTCGTAGGAATACCGCATTAATAT 31472423 Query 65552 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 65611 || ||||| || || ||||| || |||||||| ||||| | || | |||||| | Sbjct 31472422 TAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTAGATTT 31472363 Query 65612 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 65671 || ||||||||| | ||| || ||||| ||||| || |||||||| | ||| | || Sbjct 31472362 TTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAAC 31472303 Query 65672 TACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACAT 65728 | ||| ||||| || || || ||| ||| | | ||| | | |||||||| Sbjct 31472302 GATTTTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACAT 31472243 Query 65729 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788 || | ||| | || |||| |||||| || |||| |||| | ||| ||||| | Sbjct 31472242 ATTAAGTGCGATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAAC 31472183 Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 ||| || ||||| |||||||| || || || ||||| | ||||||||| || || ||| | Sbjct 31472182 TATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCT 31472123 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 |||||| | |||||| | | ||| | ||||||||||| || | |||||||| || || Sbjct 31472122 GTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCGATGAT 31472063 Query 65909 CGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTTTTCTCT--TTCGTA 65965 || ||| | | |||| || || | | |||| | ||| | |||| ||| || Sbjct 31472062 GGCAAACCAAAGAGATTGAGCTTTAATAACTCGATTCG---CTCGTCCCTCTCGTTCATA 31472006 Query 65966 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 66025 | |||| | ||| || || || |||||||||| | ||||| |||| || Sbjct 31472005 TTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATG 31471946 Query 66026 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 66085 ||||||||||| ||||| ||| | | | | | || ||||||||||| |||||||| || Sbjct 31471945 TGGACACATCAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTAT 31471886 Query 66086 CCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 66145 ||| | || | ||| | ||| | | | ||||||||| ||||| ||||| |||||||| Sbjct 31471885 CCACAATGCAAAAAAGAGATCGCGTGCACGATGTTCCTCCTTTCCAGTATTTTTTTTAAG 31471826 Query 66146 ATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 66205 || | || | | | ||| | ||||| || |||| ||||| || | ||||||| Sbjct 31471825 GTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAGATATATAGCAAATGCTCCAGG 31471766 Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 | ||| || |||||||| | || | ||| |||||| | ||||| |||||||| Sbjct 31471765 TCTTTTACCACCGCCCTGATCAACATAGCGCGCGACATTATTAAATACTCTTAACATTGG 31471706 Query 66266 -AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATAT 66324 | |||| ||||| || || || || || || | || || | || | || |||||| Sbjct 31471705 TACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATAC 31471647 Query 66325 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 66384 || || || ||||| |||||| || || || | ||||||| ||| | | Sbjct 31471646 AGTGAACATTAAGTCCAATTCCACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTG 31471587 Query 66385 TATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATT 66443 | | | || || || || |||| || || ||||| |||||||| ||||| | Sbjct 31471586 ATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAAGACAAT 31471528 Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503 || ||||| | || | ||| ||| | || || || || || ||||| | ||| Sbjct 31471527 TGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCA 31471468 Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 66563 || || | |||||| || |||| || || || ||||| ||| || |||| ||| Sbjct 31471467 GATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCG 31471408 Query 66564 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 66623 |||||||||| || ||||| |||||||| | || || |||||||| | ||| || Sbjct 31471407 ACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATAC 31471348 Query 66624 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 66683 || || | || || || ||||| ||||| ||| || || || || || |||||| Sbjct 31471347 GACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATATATAATA 31471288 Query 66684 ACCGAGTT 66691 | ||||| Sbjct 31471287 GCAGAGTT 31471280 >seq6839 Length=26866924 Score = 212 bits (234), Expect = 8e-50 Identities = 587/891 (66%), Gaps = 18/891 (2%) Strand=Plus/Plus Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 35867 |||| ||||| |||| || | ||| ||||||| || || | || ||||| Sbjct 3409365 TTTAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCCATAC 3409424 Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927 ||| ||||| || || ||| ||||| || ||||| || || || | || || | | Sbjct 3409425 GTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCT 3409484 Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987 |||| || ||||||||| | ||| || ||||| || || | ||| | || Sbjct 3409485 CCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACA 3409544 Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047 | ||| || |||||||| ||||| ||||| | |||||||||| || || | | Sbjct 3409545 GACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATGCCAATCAAGT 3409604 Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107 | || || ||||| | || ||||| ||||| ||||| | || || || | || | Sbjct 3409605 TGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGAT----G 3409660 Query 36108 ATATTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACATCAA-ACATGC 36162 || | | || | | |||| | || | | || ||||| ||||||| ||| || Sbjct 3409661 ATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACA-GC 3409719 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 || || || || | |||||||| | || || || ||||| || || || ||||| Sbjct 3409720 AAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGG 3409779 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282 ||| || ||||| || || |||||||| || || ||||| ||| |||||| ||||| Sbjct 3409780 CATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCC 3409839 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTA-TCC 36338 || || || || || ||||| | |||||| ||| | |||| || ||| | ||| Sbjct 3409840 CTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGC-CTTCGATGAAATCC 3409898 Query 36339 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 | | |||||||||||||| || ||| |||||||| || | ||||| || | Sbjct 3409899 AAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGGCATTGAACA 3409958 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 |||| | ||| | ||| ||| ||||||||| |||| | || ||||| |||| Sbjct 3409959 GATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCG 3410018 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 36518 | || | || || ||||| |||||||| || |||||||| | ||| ||||| || || | Sbjct 3410019 AGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCA 3410078 Query 36519 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 | || | || || || | | ||| ||||| || || || || || ||||| | Sbjct 3410079 CCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAGCGGCAAAGA 3410138 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGA 36638 | || | ||||| ||||| | ||||| |||| ||| || | | Sbjct 3410139 AGGCGAGCACATGGGAGATAAAGTGGCGCTCGTTATCAGTTAAACGTGCCCAGTCGGTCA 3410198 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 || ||||| | |||||| || ||||| ||||| ||||| ||||| |||| Sbjct 3410199 AGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGCCT 3410249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658116517998440