Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq6840 127 2e-24 >seq6840 Length=32352404 Score = 127 bits (140), Expect = 2e-24 Identities = 199/285 (70%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 20921 CAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTC 20980 ||||||||||| || || ||||| || ||||| || || |||| || || ||||| || Sbjct 15164140 CAGCAGGGGATTCACATGATTGTTATAGACGTGAGCATCGCCCAGCGTATGGACAAAATC 15164199 Query 20981 TCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGAT 21040 || || ||| |||||| || || ||||||| || |||| | ||| || |||||| Sbjct 15164200 GCCGGGCTTCAAGCCCGTCACATGGGCGATCATGTAGGTCAACAAGGCATACGAGGCGAT 15164259 Query 21041 GTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 ||| || || || || || |||||||||||| | ||| ||||| |||||||||| || Sbjct 15164260 GTTGAAAGGCACTCCCAGACCCATGTCGGCGCTGCGCTGATACAGTTGGCAGGACAATTC 15164319 Query 21101 CCCCCGAGCC------ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 || || | | || || ||||| || ||| || || || | ||||| | Sbjct 15164320 ACCACGCGACTGCGAAACATAGAACTGCGCCAGGCAGTGGCACGGCGGCAACGCCATTTG 15164379 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | | |||| || ||||| ||| |||| | |||||| ||||| Sbjct 15164380 GGGTATGTCCAAAGGATTCCATGCGGACATTATGATGCGACGATC 15164424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427740334309680