Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6840 585 4e-162 seq6839 233 3e-56 >seq6840 Length=32352404 Score = 585 bits (648), Expect = 4e-162 Identities = 1267/1874 (68%), Gaps = 36/1874 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 31473138 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 31473079 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || ||||| || ||||| || |||| ||| |||| | || || |||| | Sbjct 31473078 CCCGCTTTCCATGAATAAAAATGGATTGATGTTAATTTTCCATAATTGGGTTCAGCTACA 31473019 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || ||||| | ||| ||||||||||| || || ||||| || || || ||||||||||| Sbjct 31473018 TGAATATTGAAAGACTGACTTTGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATA 31472959 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 78956 | | || || ||||||||| | ||||||||| || || | ||| |||| |||| Sbjct 31472958 GTTGATTTAACTGAAATTTCCCACACAGTTTTATACAAATCACG-AATTTCTTTAGGAAT 31472900 Query 78957 -GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 | || |||| || || || |||| | || || || ||| || ||||| |||| Sbjct 31472899 AGATTCAATATTTTGTATTGAACCACGACTTGATATTATTTGATTTTTCATCTCGTCATC 31472840 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| || | || |||||| | | || | || | || ||||||||||| || || Sbjct 31472839 CCACAAATCAAGTTCAGTTAAATCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCGCC 31472780 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 ||||||||||| | |||||||| || ||||| || || | ||| |||||||| || Sbjct 31472779 AGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCC 31472720 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 ||| ||||| || || ||||| || ||||| || || | | |||| |||||| | ||| Sbjct 31472719 CAATATTTGCGCTGTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC 31472660 Query 79194 GTAT---GATCT-GATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAA 79249 || | | | | |||||| || |||| | ||| ||||||||||| | || Sbjct 31472659 GTGTTGCGCTATAGATTTT----TTAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATT 31472604 Query 79250 CATTCCAAAGATCATATTGTAGAATACCGTTACTAGC--GTATGATCCTGTGTATGTTTC 79307 ||||| | |||||| || | ||| || || || | | || || ||| || || Sbjct 31472603 TGTTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTG--CCAACGTAAGTCTC 31472546 Query 79308 ATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGT 79367 ||| ||||| || | | || ||||||||||| || || || ||||| || || || || Sbjct 31472545 ATATGGTCCATCTCTCTGAGCCAATTCACAACTGGCTTCCAAAGCTCCATAGTATATAGT 31472486 Query 79368 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG 79427 ||||||||||| || ||| | |||||| | || || | | ||| | | Sbjct 31472485 TTCGAAAATCTGCTGATTTAATAGAAATGCTTCACGACTTTCGTAGGAATACCGCATTAA 31472426 Query 79428 AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 || || ||||| || || ||||| || |||||||| ||||| | || | |||||| Sbjct 31472425 TATTAATGCGTCCGCAAACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTAGA 31472366 Query 79488 AATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---CCT 79544 ||| ||||||||| | ||| || ||||| ||||| || |||||||| | || | | Sbjct 31472365 TTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGT 31472306 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTA--TTAC 79601 || ||| || ||||| || || || ||| ||| || | | || | || Sbjct 31472305 AACGATT---TTAGTTACATCTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCAC 31472249 Query 79602 AAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 79661 |||||| || | |||| || |||| |||||| || |||| |||| | ||| ||| Sbjct 31472248 AAACATATTAAGTGCGATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATA 31472189 Query 79662 TTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACT 79721 || | |||||| ||||| || ||||| || || || ||||| | ||||||||| || || Sbjct 31472188 TTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCT 31472129 Query 79722 CTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTC 79781 ||| ||||||| | |||||| | | ||| | ||||||||||| || | |||||||| Sbjct 31472128 TTTTCTGTTACAAGAGTCCTTAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTC 31472069 Query 79782 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGACTTGTATCTCTTTTCTCT-- 79838 || || || ||| | | |||| || || | | || | | ||| | |||| Sbjct 31472068 GATGATGGCAAACCAAAGAGATTGAGCTTTAATAACTCGATTCG---CTCGTCCCTCTCG 31472012 Query 79839 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACA 79898 ||| |||| |||| | ||| || || || ||||||||||| | ||||| || Sbjct 31472011 TTCATATTTGATATAGAGGTTTTCAAAATCTTCACCCCAAACATCTGGGAGGCCAGGGCA 31471952 Query 79899 TTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATC 79958 || | ||||||||||| ||||| ||| ||| | | | || ||||||||||| ||||| Sbjct 31471951 TTTATGTGGACACATCAATGACCAGTCTTCATTAGCTTCAACACGTTTCATAAAAAGATC 31471892 Query 79959 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 80018 ||| ||||| | || | ||| ||||| | | | ||| ||||| ||||| ||||| || Sbjct 31471891 AGGTATCCACAATGCAAAAAAGAGATCGCGTGCACGATGTTCCTCCTTTCCAGTATTTTT 31471832 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 |||||| || | || | | | ||| || ||||| || |||| ||||| || | | Sbjct 31471831 TTTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCCAGATATATAGCAAATGC 31471772 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 ||| |||| ||| || |||||||| | || | ||| |||||| | ||||| || Sbjct 31471771 TCCAGGTCTTTTACCACCGCCCTGATCAACATAGCGCGCGACATTATTAAATACTCTTAA 31471712 Query 80139 CATTGG-AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 |||||| | |||| ||||| || || || || || || | || || | || | || | Sbjct 31471711 CATTGGTACTAAT-CCATTTGAAGTGCCGTTCGTTCCACAAATTGAGGTGCCTTTAGCTC 31471653 Query 80198 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 80257 ||||| || || || ||||| |||||| || || || | ||||||| ||| Sbjct 31471652 GAATACAGTGAACATTAAGTCCAATTCCACCTGCCGACTTTGATATCATTGCGCATTGTT 31471593 Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCA-TCAATCATGTTAAGTAGAAAACAGCTA 80316 | | | | | || || || || |||| || | ||||| |||||||| | Sbjct 31471592 CAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAA-AAGAAAACATGAA 31471534 Query 80317 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 80376 |||| ||| ||||| | || | ||| ||| | || || || || || ||||| | Sbjct 31471533 GACAATTGTGGACGATTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAA 31471474 Query 80377 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCT 80436 ||||| || | |||||| || |||| || || || ||||| ||| || ||| Sbjct 31471473 CGCTCAGATAGCAAATTGTAGGTTTCAACTGCAGAATCAATATCTTCGCCATGTATACCT 31471414 Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496 | ||||||||||||| || ||||| |||||||| | || || ||||||||| | | Sbjct 31471413 ATGGCGACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGC 31471354 Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 80556 || || || || | || || || ||||| ||||| ||| || || || || || Sbjct 31471353 AAATACGACCGCTCAAGTGTCTTGAATCCAAAGTAGTTATATCCGAAATCGCGATCATAT 31471294 Query 80557 ATAATAACCGAGTT 80570 |||||| | ||||| Sbjct 31471293 ATAATAGCAGAGTT 31471280 >seq6839 Length=26866924 Score = 233 bits (258), Expect = 3e-56 Identities = 560/840 (67%), Gaps = 13/840 (2%) Strand=Plus/Plus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 || ||||| ||| ||||| || || ||| ||||| || ||||| || || |||| Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 || || | ||||| || || ||||| | ||| || ||||| || || | | Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3409534 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 || | || | |||||| |||||||| ||||| ||||| | |||||||||| Sbjct 3409535 TCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATG 3409594 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || || | || || || ||||| | || ||||| ||||| ||||||| || ||||| Sbjct 3409595 CCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCC 3409654 Query 49900 GTTATAATAGATCTAACGGTTTCT-TCAC---TCGGTGGATGCAATAAATGTTTAAACAT 49955 | || ||||| | | | | |||| | || | |||| ||||| ||||| Sbjct 3409655 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3409710 Query 49956 CAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 || ||| || || || || |||| |||||||| | || | || ||||| || | Sbjct 3409711 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3409769 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAA 50074 | || |||||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 3409770 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3409829 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--CTGTC 50132 |||||||||| || || || || || |||| | |||||| ||| | | ||| || Sbjct 3409830 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTCG 3409889 Query 50133 ATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 ||| | |||| | |||||||||||||| || ||| ||||| ||||| | || Sbjct 3409890 ATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGG 3409949 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 |||| || ||||| | ||| | ||| ||| ||| |||||||||| | || | Sbjct 3409950 CATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGT 3410009 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||| ||||| || | || || ||||| || ||||| || |||||||| | ||| |||| Sbjct 3410010 ACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGG 3410069 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 | || ||||| || | || || || | | ||| ||||| || || || || | Sbjct 3410070 TTATTTGCACCTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAG 3410129 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 | ||||| || || | ||||| ||||| || ||||| |||| || Sbjct 3410130 CGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGGCGCTCGTTATCAGTTAAACGTGCCC 3410189 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || | | || ||||| | ||| || || ||||| ||||| ||||| ||||| |||| Sbjct 3410190 AGTCGGTCAAGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGCCT 3410249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718207379039240