Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq6839 154 1e-32 >seq6839 Length=26866924 Score = 154 bits (170), Expect = 1e-32 Identities = 566/876 (65%), Gaps = 14/876 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || ||||| |||| | || ||| ||||| || || || | |||||||| | Sbjct 3409367 TAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCCATACGT 3409426 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||| | |||| |||| || ||||||||||| || || ||||| || || | ||| Sbjct 3409427 TGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCC 3409486 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||| |||||||| | | | | | ||| || ||| ||||| | | | Sbjct 3409487 ATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAGA 3409546 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||| |||| ||| |||||||| || ||||| || |||||||||| || || | || Sbjct 3409547 CGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATGCCAATCAAGTTG 3409606 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 || || | || || | ||| |||| || || | ||||| || || || Sbjct 3409607 ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATGATCTCA 3409666 Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAAAATC 13882 | || |||| |||| | | | ||| || || | ||| ||||| || Sbjct 3409667 ATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACA-GCAAAGTC 3409725 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 |||||| | |||||| || | || | || || || || || | || ||||||| Sbjct 3409726 ACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCATCAG 3409785 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 || ||||| || | |||||| || | ||||| || |||||| |||||||| || Sbjct 3409786 ACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTCCAC 3409845 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAA---CGATGCTTTTTTGTTCGATATCCATTT 14059 ||||| ||||| || | || || ||||| || || || | | || ||||| Sbjct 3409846 GGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGC--CTTCGAT-GAAATCCAAGA 3409902 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | ||| || | | ||||||||||| ||||| || | ||| Sbjct 3409903 GAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGGCATTGAACAGATA 3409962 Query 14120 TTCC--TTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 ||| ||| || | | | | | ||| |||||||| || || | ||| ||||| || || Sbjct 3409963 ATCCCGTTC-CTGTGGATCCCT--AATATATGTATCGATCAGCACGCTGTACATCTCCGA 3410019 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC 14236 ||| | || ||||| || || ||||| ||||| || || | |||||| | ||| || Sbjct 3410020 GTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCAC 3410079 Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 ||| | || | ||| | | ||| |||||||| || ||||| ||| ||||| || Sbjct 3410080 CTCCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAGCGGCAAAGAA 3410139 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356 || | | | ||||||| |||| | || | | | ||| |||| || Sbjct 3410140 GGCGAGCACATGGGAGATAAAGTGGCGCTCGTTATCAGTTAAACGTGCCCAGTCGGTCAA 3410199 Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 |||||||| ||||| || || || || ||||| || Sbjct 3410200 GTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAA 3410235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479686977259400