Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq6839 163 3e-35 >seq6839 Length=26866924 Score = 163 bits (180), Expect = 3e-35 Identities = 569/877 (65%), Gaps = 16/877 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 || ||||| |||| | || ||| ||||| || || || | |||||||| | Sbjct 3409367 TAGAAATCCGCATCAAGTGTAAAGACATTGTCTAGCCGATTCGATGTGACGCCCATACGT 3409426 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||| | |||| |||| || || |||||||| || || ||||| || || | ||| Sbjct 3409427 TGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTCC 3409486 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 ||||| ||||||||| | | | | | ||| || ||| ||||| | || | Sbjct 3409487 ATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAACAGA 3409546 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 | ||| |||| ||| |||||||| || ||||| || |||||||||| || || | || Sbjct 3409547 CGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATGCCAATCAAGTTG 3409606 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611 || || | || || | ||| |||| || || | ||||| || || || | Sbjct 3409607 ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATGAT---C 3409663 Query 13612 TTAATAATG---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC-GCAAA 13667 | ||| ||| ||| |||| | | | ||| || || | ||| ||||| Sbjct 3409664 TCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCAT-CACAGCAAA 3409722 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 |||||||| | |||||| || | || | || || || || || | || ||||| Sbjct 3409723 GTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCAT 3409782 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || || ||||| || | |||||| || | || || || |||||| |||||||| Sbjct 3409783 CAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTC 3409842 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 || ||||| ||||| || | || || ||||| || || ||| ||||| Sbjct 3409843 CACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGCCTTCGATGAAATCCAAGA 3409902 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 ||||| || | ||| || | | ||||||||| | |||||||| | || Sbjct 3409903 GAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGGCATTGAACAGATA 3409962 Query 13908 TTCC--TTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 ||| ||| || | | | | | ||| |||||||| || || | ||| ||||| || || Sbjct 3409963 ATCCCGTTC-CTGTGGATCCCT--AATATATGTATCGATCAGCACGCTGTACATCTCCGA 3410019 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 ||| | || || || || || ||||| ||||| ||||| | |||||| | ||| || Sbjct 3410020 GTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCAC 3410079 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTT-TCATTAACAATACCATCACTAGCTGCAAAAA 14083 |||| | || | || | |||| || ||||||||||| ||||| ||| ||||| | Sbjct 3410080 CTCCTGGCTGAAGCGCTC-GACAAGATTCTCATTAACAATGCCATCGGAAGCGGCAAAGA 3410138 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTA 14143 | || | | | ||||||| |||| | || | | | ||| |||| | Sbjct 3410139 AGGCGAGCACATGGGAGATAAAGTGGCGCTCGTTATCAGTTAAACGTGCCCAGTCGGTCA 3410198 Query 14144 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 | |||||||| ||||| || || || || ||||| || Sbjct 3410199 AGTCCTTAGAGAGATCCACCTCCTCCACAGTCCAGAA 3410235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478547874675240