Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6840 538 5e-148 seq6839 185 1e-41 >seq6840 Length=32352404 Score = 538 bits (596), Expect = 5e-148 Identities = 1231/1841 (67%), Gaps = 22/1841 (1%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || || ||||| |||||||| || || ||||| ||||| |||||||| || Sbjct 31473112 TTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAATGGAT 31473053 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 |||| ||| ||| | || || |||| |||||||| | |||||||||||||| Sbjct 31473052 TGATGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTTTGATC 31472993 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 || || ||||| || || || ||||||||||| | | || || ||||||||| | Sbjct 31472992 AATAAACGCTCCTCTATCAGCCGCCATTTTTATAGTTGATTTAACTGAAATTTCCCACAC 31472933 Query 71007 AGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCAC 71062 ||||||||| || || | ||| |||| |||| | || |||| || || || |||| Sbjct 31472932 AGTTTTATACAAATCACG-AATTTCTTTAGGAATAGATTCAATATTTTGTATTGAACCAC 31472874 Query 71063 CATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTC 71122 | || || || |||||| ||||| |||| ||| || | || |||||| | | Sbjct 31472873 GACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTAAATCAC 31472814 Query 71123 TAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATAT 71182 || | || | || ||||||||||| || ||||||||||||| | |||||||| | Sbjct 31472813 GGAGTAAGTGGTGGTTCACTACTTGAAACTCGCCAGACAATACTCGTCTTGTGTAAATGT 31472754 Query 71183 TACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCG 71242 | ||||| || || | ||||||||||| ||||| ||||| || || ||||| || | Sbjct 31472753 TTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCTGTAGATGCTGTAG 31472694 Query 71243 GCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTA-GA 71301 |||| || || | | || | |||||| | ||| ||| || | || ||||| || Sbjct 31472693 GCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTG-CGCTATAGATTTTTTAAGA 31472635 Query 71302 GATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCG 71361 | | ||| | ||||||||| | |||| || || Sbjct 31472634 GCATTCCAGTCCCAAAGATCTGTTGGTGATTTGTTCCACATATCATACTGCAAAATTCCT 31472575 Query 71362 TTACTAGC--GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCAC 71419 || || | | || || | || || || |||||||| ||| | | || | ||||| Sbjct 31472574 TTGCTTACTGGACTG--CCAACGTAAGTCTCATATGGTCCATCTCTCTGAGCCAATTCAC 31472517 Query 71420 AACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTG 71479 |||| || || || |||||||| || || ||||||||||||| || ||| | || Sbjct 31472516 AACTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAGAAATG 31472457 Query 71480 CTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGC 71539 |||| | || || | | ||| | | || || ||||| || || ||||| || | Sbjct 31472456 CTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTC 31472397 Query 71540 CAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAAT 71599 ||||||| ||||| | ||| | |||||| ||| ||||||||| | ||| || |||| Sbjct 31472396 CAATACCAATAGGACGGTGACGTAAATTAGATTTTTTAGCTTCTGGCAAAGGGTAGTAAT 31472337 Query 71600 TAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 | ||||| || |||||||| | ||| | | | ||| ||||| || || || Sbjct 31472336 TTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACATCTTTAAGCTTTT 31472277 Query 71660 GAAAATCAAA---TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTAC 71716 ||| ||| | | || | | | ||||||| || | || | || |||| ||||| Sbjct 31472276 TAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATTGACGCCAAATTAC 31472217 Query 71717 AAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACT 71776 | || |||| |||| | | | ||||| | ||||| ||||| |||||||| || | Sbjct 31472216 ACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACTGCATT 31472157 Query 71777 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAA 71836 | || ||||| | ||||||||| || || ||| ||||||| | |||||| | | || Sbjct 31472156 TTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTAAATAACATGT 31472097 Query 71837 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 71896 | ||||||||||| || | |||||||| || || || ||| | | |||| |||| Sbjct 31472096 AAGGAGTACCAGTCTCTACTTGAGATTCGATGATGGCAAACCAAAGAGATTGAGC-TTTA 31472038 Query 71897 TTATATTCTTGTATCTCTTTTCTCT--TTCGTATTGTGTATATAATCGTTCGAACTCGTC 71954 || | || | ||| | |||| ||| |||| |||| | ||| || || || Sbjct 31472037 ATA-ACTCGATTCGCTCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAAATCTTC 31471979 Query 71955 TCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATC 72014 |||||| ||| | ||||| |||| || ||||||||||||||||| ||| ||| Sbjct 31471978 ACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATCAATGACCAGTCTTCATT 31471919 Query 72015 ATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 72074 | | | || ||||||||||| |||||||| ||||| | || | ||| ||||| | | Sbjct 31471918 AGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAGAGATCGCGTGC 31471859 Query 72075 TCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 72134 | ||| ||||| ||||| ||||| |||||||| || | || | | | ||| || || Sbjct 31471858 ACGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGAGTG 31471799 Query 72135 CCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTA 72194 ||| || |||| ||||| || | |||| || | ||| || |||||||| | || Sbjct 31471798 CCAAGGCTCCAGATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCAACATA 31471739 Query 72195 TCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCATTGG 72253 | ||| |||||| | ||||| |||||||| | |||| ||||| || | || || | Sbjct 31471738 GCGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGTGCCGTTCG 31471680 Query 72254 TCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTG 72313 | || | || || | || | || |||||| | || || || ||||| |||| Sbjct 31471679 TTCCACAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAATTCCACCTG 31471620 Query 72314 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 72373 || || || || | ||||||| ||| | | | | | || || || || |||| Sbjct 31471619 CCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATTGAATCAG 31471560 Query 72374 CCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 72432 || || ||||| |||||||| ||||| ||| ||||| | || | ||| ||| Sbjct 31471559 ACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGCAGCAAAA 31471501 Query 72433 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCT 72492 | || || || || || ||||| | ||||| || | |||||| || |||| || Sbjct 31471500 AGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCAACTGCA 31471441 Query 72493 GATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTT 72552 || || ||||| |||||| |||| ||||||||||||| || |||||| |||||| Sbjct 31471440 GAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCTGTGGTCTT 31471381 Query 72553 TCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 72612 || | || || ||||||||| | ||| || || || | || || || ||||| Sbjct 31471380 TCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGAATCCAAAG 31471321 Query 72613 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 ||||| ||| || || || || || |||||| | || || Sbjct 31471320 TAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTT 31471280 >seq6839 Length=26866924 Score = 185 bits (204), Expect = 1e-41 Identities = 443/662 (67%), Gaps = 15/662 (2%) Strand=Plus/Plus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 || ||||| ||| ||||| || || ||| ||||| || |||||||| || |||| Sbjct 3409415 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3409474 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 || || | ||||| || || ||||| | ||| || ||||| || || | | Sbjct 3409475 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3409534 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 || | || | ||| || | ||||| ||||| ||||| | |||||||||| Sbjct 3409535 TCCACCAACAGACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATG 3409594 Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004 || || | || || || ||||| | || ||||| ||||| ||||| | || || || Sbjct 3409595 CCAATCAAGTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCC 3409654 Query 42005 GTTATAATAGATCTTACTGTTTCT-TCAC---TCGGTGGATACAATAAATGTTTAAACAT 42060 | || ||||| | || | | |||| | || | | || ||||| ||||| Sbjct 3409655 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3409710 Query 42061 CAA-ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 || ||| || || || || |||| ||||| || | || || || ||||| || | Sbjct 3409711 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3409769 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 | || |||||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 3409770 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAA 3409829 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGT 42236 |||||||||| || || || || || ||||| | |||||| ||| | |||| || Sbjct 3409830 AGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCGGC-CTTC 3409888 Query 42237 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 ||| ||||| | |||||||||||||| || ||| ||||| ||||| | | Sbjct 3409889 GATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACG 3409948 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 ||||| || ||||| | ||| | ||| ||| |||||||||||||| | || Sbjct 3409949 GCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTG 3410008 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || | || || ||||| || ||||| || |||||||| | || ||| Sbjct 3410009 TACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCG 3410068 Query 42416 GT 42417 || Sbjct 3410069 GT 3410070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671081809209160