Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6840 152 5e-32 seq6838 96.9 4e-15 >seq6840 Length=32352404 Score = 152 bits (168), Expect = 5e-32 Identities = 498/767 (65%), Gaps = 15/767 (2%) Strand=Plus/Minus Query 156471 TTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCA 156530 ||| |||| || |||| | |||| || |||||||| ||||| ||||| || ||||| Sbjct 31472822 TTAAATCACGGAGTAAGTGGTGGTTCACTACTTGAAACTCGCCAGACAATACTCGTCTTG 31472763 Query 156531 AAAACAAATTACTGTGAA----ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCG 156586 | | || |||| | || || || ||||| || ||| | |||||| || Sbjct 31472762 TGTAAATGTT----TGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCT 31472707 Query 156587 GTCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATA 156646 || | || || |||||| || | || || ||||| | | |||| || |||| Sbjct 31472706 GTAGATGCTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATA 31472647 Query 156647 TTTATTTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGTAT 156706 | |||| | ||||||||| | || ||| | ||||||| ||| || Sbjct 31472646 GATTTTTTAAGAGCATTCCAGTCCCAAAGATCTGTTGGTGATTTGTTCCACATATCATAC 31472587 Query 156707 TGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCA-CTAACAGA 156765 ||||| ||||||| ||| || || || | | || ||| || || || | || Sbjct 31472586 TGCAAAATTCCTTTGCTTACTGGACTGCCAACGTAAGTCTCATATGGTCCATCTCTCTGA 31472527 Query 156766 TGCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATT 156825 |||| ||| ||||||| || | || ||| || | |||||| ||| || | ||| Sbjct 31472526 -GCCAATTCACAACTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATT 31472468 Query 156826 CAATAGAACGGCAGCATCGCTCACGTACGGTATGC-GCAACATAACAAATGCATCGGCCA 156884 ||||||| || || || |||| || || | ||| | | ||||| || || | Sbjct 31472467 TAATAGAAATGCTTCACGACTTTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAA 31472409 Query 156885 AACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAA 156944 | ||||| | ||||| || || ||||| || || | |||||||||||| || | | Sbjct 31472408 ACCCTTGGACTCCAATACCAATAGGACGGTGACGTAAATTAGATTTTTTAGCTTCTGGCA 31472349 Query 156945 TAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACAG 157004 ||||||| |||| |||||| |||||||| || | | | || ||| ||| Sbjct 31472348 AAGGGTAGTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACAT 31472289 Query 157005 TGTGCAATAGTTGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCG 157061 | | || ||| ||| ||| | || | | | | | |||| | || || | Sbjct 31472288 CTTTAAGCTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATTG 31472229 Query 157062 ACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACA 157121 |||| | |||||| || || |||| || || || |||||| |||||||| | |||| Sbjct 31472228 ACGCCAAATTACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACA 31472169 Query 157122 AATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCT 157181 ||| ||||||||||| ||| ||| ||| |||||||| | ||| |||| ||||| Sbjct 31472168 GATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCT 31472109 Query 157182 TGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228 | |||||||||| || || || || || ||||| ||| |||||| Sbjct 31472108 TAAATAACATGTAAGGAGTACCAGTCTCTACTTGAGATTCGATGATG 31472062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || |||||||| |||||||| ||| | |||| ||||| | ||| || ||| Sbjct 15336149 GTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCCAATTGCTTGCCA 15336208 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| |||||||| ||||| || ||||||||||| || || ||| Sbjct 15336209 GCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTTG 15336268 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || |||| ||||| || |||| ||| | ||||| || || | ||| Sbjct 15336269 ACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTTAGGGTT 15336328 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 15336329 TTAACAAAGATCTGCAT 15336345 >seq6838 Length=24764193 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || ||||| || || ||||||||||| | Sbjct 2124718 CCACCACGGAGACGGAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGAC 2124659 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| ||||| || ||||| |||||||||| |||||||| || || Sbjct 2124658 AAGGTGCGGCCATCTTCCAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGA 2124599 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | || | || || | || || || Sbjct 2124598 ATACCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACC 2124539 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| |||| || || ||||| ||||||||| Sbjct 2124538 TCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 2124491 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || || | || ||||| || || ||||||||||| | Sbjct 2124946 CCACCACGCAGACGGAGAACCAAGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCAGAC 2124887 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| ||||| || || || |||| ||||| ||||| || || || Sbjct 2124886 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 2124827 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | ||| | |||||| | || || || Sbjct 2124826 ATACCTTCCTTGTCCTGAATCTTAGCCTTCACGTTTTCAATCGTGTCGGAAGGCTCCACC 2124767 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| |||| || || ||||| ||||||||| Sbjct 2124766 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACGAAGATTTGCATA 2124719 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||| || || ||||||||||| | Sbjct 2123350 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGAC 2123291 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| ||||| || || || |||||||||| ||||| || || || Sbjct 2123290 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGA 2123231 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | || | || || | || || || Sbjct 2123230 ATACCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACC 2123171 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| |||| || || ||||| ||||||||| Sbjct 2123170 TCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 2123123 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| || ||||| || || ||||||||||| | Sbjct 2124262 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGAC 2124203 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| ||||| || || || |||| ||||| ||||| || || || Sbjct 2124202 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGA 2124143 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | || | || || | || || || Sbjct 2124142 ATACCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACC 2124083 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| |||| || || ||||| ||||||||| Sbjct 2124082 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 2124035 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || || | || ||||| || || ||||||||||| | Sbjct 2124490 CCACCACGCAGACGGAGAACCAAGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCAGAC 2124431 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| ||||| || || || |||||||||| |||||||| || || Sbjct 2124430 AAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 2124371 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | || || | || || || Sbjct 2124370 ATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACC 2124311 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| |||| || || ||||| ||||||||| Sbjct 2124310 TCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 2124263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506971043931120