Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6839 206 4e-48 seq6840 165 1e-35 seq6837 161 1e-34 >seq6839 Length=26866924 Score = 206 bits (228), Expect = 4e-48 Identities = 562/848 (66%), Gaps = 32/848 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| ||||||| || ||||| || || ||||| ||||| || |||||| || ||| | Sbjct 3410249 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCTAAGGACTTGACCGACT 3410190 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | ||||| ||||| | ||||| | ||||| || || | | |||||||||| Sbjct 3410189 GGG---CACGTTTAACTGATAACGAGCGCCACTTTATCTCCCATGTGCTCGCCTTCTTTG 3410133 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACGATTCTCTCAAGAGTTGACC 125216 ||| |||||||| || || || || |||| ||| || || ||| || ||| || Sbjct 3410132 CCGCTTCCGATGGCATTGTTAATGAGAATCTTGTCGA-GCGCTTCAGCCAGGAGGTGCAA 3410074 Query 125217 ATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGA 125275 || | || | ||| || || || || || |||||| || ||||| ||||||||||| Sbjct 3410073 ATAACCGAAG-CTCGTTGTTTCTATGGCTTTCAAATCGCCATGGAGAATGTGCACTCGGA 3410015 Query 125276 AATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACAT--GCTC 125333 |||||| ||||| || | || ||| | ||||| || | || || || Sbjct 3410014 GATGTACAGCGTGCTGATCGATACATATATTAGGGATCCACA--GGAACGGGATTATCTG 3409957 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGG 125393 || || || | || || |||| || | |||||| | |||| | | ||| Sbjct 3409956 TTCAATGCCGTTGAAACAATGCCCGCTGTCAAGCGAAAGGCCGATTGGGCGCTCTCTTGG 3409897 Query 125394 A-TCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 | | || || ||| | || || | ||| ||| | | || ||||| ||||| || Sbjct 3409896 ATTTCAT--CG--AAGGCCGCGAACTTTGGCGAGAGAATCATTGCGTTCGCTGCCGTGGA 3409841 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| ||||||||| || || ||||| | ||||||||||| ||||| || || || || Sbjct 3409840 GGGAATCTTCTTTAGTGGCAGCTTTGCCTCGATCTTTTGGCTGAAGAAACGTGGTCTGAT 3409781 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 |||||| ||||| | || ||||| || || || ||||||||| | || |||||||| Sbjct 3409780 GCCCGGTCTGACCTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTT 3409721 Query 125570 TGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAAAAG 125627 ||| | | |||| || || || ||||| | | ||| ||| Sbjct 3409720 TGCTGTGATGATGTTCCG---GCATTTG--------GTGCAACGTCCTAGCCGTGAGCGC 3409672 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 |||| | || | | ||||| || | || || ||||||||||| || || | || Sbjct 3409671 ATCATTGAGATCATCTCGGATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTG 3409612 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || |||| | ||||||||||||| || | |||| | |||| || || ||||| || Sbjct 3409611 CCCGTCAACTTGATTGGCATGAATTGTGCATTGATGTCCCAGTATATTGAATTTGTTGCG 3409552 Query 125748 GATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGAT 125807 |||||||| || || | || |||| || ||||| | |||||||| || Sbjct 3409551 GATCGTCTGTTGGTGGAACTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACC 3409492 Query 125808 TTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAG 125867 || ||| | || || || || || ||||| ||||| |||||||| || || |||| Sbjct 3409491 TTTATGGAGATGATCTCGCTGGATGGCAAGACTAACTTCTTCGAGAAAAAAGTTGGCGAA 3409432 Query 125868 TACAAACG 125875 || |||| Sbjct 3409431 TATCAACG 3409424 >seq6840 Length=32352404 Score = 165 bits (182), Expect = 1e-35 Identities = 381/566 (67%), Gaps = 10/566 (2%) Strand=Plus/Minus Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125 ||| |||||||| ||||| || || ||||||||| | |||| ||| | || |||| | Sbjct 15164560 GGGTGATCTGGGTCCAGTATATGGCTTCCAGTGGCGTCACTTTGGCGCAAAATATGGTAA 15164501 Query 70126 CTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACT 70183 ||| ||| ||||| | || |||||| ||||||| || | ||| |||| || ||| Sbjct 15164500 ATGCACCGAC-GACTACACCGGCCAGGGTATTGATCAGCTGAA-ACAGGTCATCGATACT 15164443 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 | | | |||| | ||| | | ||| |||||| | ||||||||||| || | Sbjct 15164442 ATACGCAACGATCCGGCGGATCGTCGCATCATAATGTCCGCATGGAATCCTTTGGACATA 15164383 Query 70244 CACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA---CTCGTA--CG-AT 70297 | ||||||||| | || ||||| ||||| |||| ||||| || ||| | || | Sbjct 15164382 CCCCAAATGGCGTTGCCGCCGTGCCACTGCCTGGCGCAGTTCTATGTTTCGCAGTCGCGT 15164323 Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357 || ||||||| ||| | |||||||| | || ||||||||||| || || || || || Sbjct 15164322 GGTGAATTGTCCTGCCAACTGTATCAGCGCAGCGCCGACATGGGTCTGGGAGTGCCTTTC 15164263 Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417 ||||| || ||| | ||||||| ||||||| || || | || ||| |||| | Sbjct 15164262 AACATCGCCTCGTATGCCTTGTTGACCTACATGATCGCCCATGTGACGGGCTTGAAGCCC 15164203 Query 70418 CACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTA 70477 ||| || || || || | ||||| |||||||| ||| ||||| | | || | Sbjct 15164202 GGCGATTTTGTCCATACGCTGGGCGATGCTCACGTCTATAACAATCATGTGAATCCCCTG 15164143 Query 70478 AAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTT 70537 || ||| | |||| || || | || || ||||| || | || | ||||| Sbjct 15164142 CTGGAGCAGATGAAACGTGAACCACGTCCCTTCCCCAAACTTGTCTTCAAGAGGCAAGTT 15164083 Query 70538 GAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCT 70597 |||||||| |||| ||||||||||| ||| |||||| |||| ||| Sbjct 15164082 ACGAATATTGAGGATTTTCGCTACGAAGATTTCGAAATTGTGGGTTACAATCCGTACGGC 15164023 Query 70598 AAGATTCCCATGGTTCTGGCTGTTTA 70623 ||||||| |||| |||| || || Sbjct 15164022 AAGATTCAAATGGAAATGGCCGTATA 15163997 >seq6837 Length=16943266 Score = 161 bits (178), Expect = 1e-34 Identities = 340/506 (67%), Gaps = 16/506 (3%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||| ||||| || ||||| | || ||||||||||| || |||||| Sbjct 698865 TTGCGGAAGAAGATGACGCCGGCACGTGGACCGCGCAGCGTCTTGTGCGTCGTTGTGGTC 698924 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || ||||| ||||| || || || || | | | || | |||||| || | | Sbjct 698925 ACGATGTCGGCGTACTCGAATGGAGAGGGGATCTGCTCGGCGGCCACCAAGCCGGCGACG 698984 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| |||| | | || |||| ||||| || | Sbjct 698985 TGCGCCATGTCGGCCATCAGATAGGCGCCGACCTCGTCACAGATCTTACGGAAACGGCCG 699044 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 || || | | || | |||||| | |||| || ||||| | | ||| |||| Sbjct 699045 TAATCGAGCAGACGTGAATAGCACGAGATGCCAGCGATGATGATCTGAGGGCGGAAT--G 699102 Query 127342 TTGGCACT--CTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGT 127399 | || || ||| || || ||| | ||||| | || || |||| |||| |||||||| Sbjct 699103 TGCGCGCTGCCTCAGCCAGCTTGTCGTAGTCAATCAGGCCCGTCTCCGGATTCACCTTGT 699162 Query 127400 ACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATC 127447 |||||||||| ||||| |||| ||||| || || | || ||| ||| | Sbjct 699163 ACGGCATGCTCTCGAAGAAGATGGATGTGGCCGAGATCTTCTTGCTGGGCGTGAAGAAGC 699222 Query 127448 CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAA 127507 ||||||||| ||||| || ||||||||||| || ||||| || | | | || || | Sbjct 699223 CGTGCGTCAAATGGCCGCCATCGGGCAGATCCAGGCCCATAATACGATCATGTGGACGCA 699282 Query 127508 CGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTC 127567 | || || || || || | |||||| ||| || || || || || ||| || | Sbjct 699283 GTACGCCCGTATAGACAGCCAGATTGGCCGGCGATCCGGAATAGGGCTGCACATTGACGC 699342 Query 127568 CCCATTCGGACTCGTTCAAATTGAAC 127593 |||| ||| ||| | ||||||| Sbjct 699343 CCCAATCGTTGCTGTTGAGATTGAAC 699368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740995830175160