Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6838 105 5e-18 seq6840 98.7 7e-16 seq5292 91.5 1e-13 >seq6838 Length=24764193 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || ||||||||||| | | | | ||||| Sbjct 2124701 AACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTC 2124642 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||||||| | |||| ||| || || || ||||| ||||| ||||| Sbjct 2124641 CAGTTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTG 2124582 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| ||| | || ||||||||| || || || ||||| |||||||| Sbjct 2124581 AATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTTTT 2124522 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || ||||||||| Sbjct 2124521 GCCAGTCAGGGTCTTCACGAAGATTTGCATA 2124491 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || ||||||||||| | | | | ||||| | ||| Sbjct 2123327 ATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCTTCCAGTTG 2123268 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| ||| | |||| ||| || ||||| ||||| ||||| ||||| |||||| Sbjct 2123267 CTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATTTT 2123208 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || ||||||||| || || || ||||| |||||||| || || Sbjct 2123207 AGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTTTTGCCAGT 2123148 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || || ||||||||| Sbjct 2123147 CAGGGTCTTCACGAAGATTTGCATA 2123123 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || ||||||||||| | | | | ||||| | ||| Sbjct 2124239 ATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCTTCCAGTTG 2124180 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| ||| | || | ||| || ||||| ||||| ||||| ||||| |||||| Sbjct 2124179 CTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATTTT 2124120 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || ||||||||| || || || ||||| ||||| || || || Sbjct 2124119 AGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 2124060 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || || ||||||||| Sbjct 2124059 CAGGGTCTTCACGAAGATTTGCATA 2124035 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||||||||| || || || |||||||| || | | | | ||||| Sbjct 2123105 AACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGACCATCTTC 2123046 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| ||| | |||| ||| || ||||| ||||| ||||| || || Sbjct 2123045 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTG 2122986 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| || |||| ||||||||| | || || || | || ||||| || Sbjct 2122985 AATCTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGTCTT 2122926 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || ||||||||| Sbjct 2122925 GCCAGTCAGGGTCTTCACGAAGATTTGCATA 2122895 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || ||||| || || || || ||||||||||| | | | | ||||| Sbjct 2124473 AACCAAGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGGCCATCTTC 2124414 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| ||| | |||| ||| || || || ||||| ||||| ||||| Sbjct 2124413 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTG 2124354 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| ||| | || ||||||||| || || || ||||| |||||||| Sbjct 2124353 AATCTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTTTT 2124294 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || ||||||||| Sbjct 2124293 GCCAGTCAGGGTCTTCACGAAGATTTGCATA 2124263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || ||||| |||||||| || || | | | ||||| Sbjct 2125156 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 2125097 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| || | |||| ||| || || || ||||| ||||| ||||| | Sbjct 2125096 AGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2125037 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||||||| | || || || | || ||||| || Sbjct 2125036 ATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGTCTTG 2124977 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || ||||||||| Sbjct 2124976 CCAGTCAGGGTCTTCACGAAGATTTGCATA 2124947 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || || ||||| || | | | | ||||| Sbjct 2122420 ACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCC 2122361 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | |||| ||| || || || ||||| ||||| ||||| | Sbjct 2122360 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2122301 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||||||| | || || || | || ||||| || Sbjct 2122300 ATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCAACCTCCAGAGTGATGGTCTTT 2122241 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT--------TGAAAATAAAA 15377 || |||| |||||| || || || ||||| || ||||||||||| Sbjct 2122240 CCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTAATTCTGAAAATAAAA 2122190 >seq6840 Length=32352404 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | ||| || |||||||| |||||||| ||| ||| | | | ||||| Sbjct 15336137 ACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTCC 15336196 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| |||||||| | || | ||| || || || ||||||||||||||||| Sbjct 15336197 AATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 15336256 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || |||||||| ||| || || | || ||||| ||| Sbjct 15336257 ATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 15336316 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| || ||||| Sbjct 15336317 CCCGTTAGGGTTTTAACAAAGATCTGCAT 15336345 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| || || || |||||||| ||| ||| | | | || || | || ||||| Sbjct 311339 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTGCCG 311280 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 ||| | |||||||| || || || ||| ||||| |||||||| || ||| ||| Sbjct 311279 GCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTG 311220 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| | || ||||| || || || || ||||||||||| || || || |||||| Sbjct 311219 ACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTT 311160 Query 15347 TTTACAAAAATTTGCATATTTGAAA 15371 || || || |||||||| |||| || Sbjct 311159 TTAACGAAGATTTGCAT-TTTGTAA 311136 >seq5292 Length=4599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || ||||| |||||||| || || | | | ||||| Sbjct 1830 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 1771 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| || | |||| ||| || || || ||||| ||||| ||||| | Sbjct 1770 AGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 1711 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||||||| | || || || | || ||||| || Sbjct 1710 ATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGTCTTG 1651 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || || ||||||||| Sbjct 1650 CCAGTCAGGGTCTTCACGAAGATTTGCATA 1621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362149003422381