Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6838 95.1 8e-15 seq6840 91.5 9e-14 >seq6838 Length=24764193 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | ||||| || || || || |||||||||||||| || | || ||| Sbjct 2124928 ACCAAGTGGAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCTTCC 2124869 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||| || || || | ||| |||||||| | ||| || ||||| || || | Sbjct 2124868 AGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 2124809 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| ||| || || ||| |||||||||| || | || |||||||| || || Sbjct 2124808 ATCTTAGCC---TTCACGTTTTCAATCGTGTCGGAAGGCTCCACCTCCAGAGTGATGGTC 2124752 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| |||||||| Sbjct 2124751 TTGCCAGTCAGGGTCTTAACGAAGATTTGCAT 2124720 >seq6840 Length=32352404 Score = 91.5 bits (100), Expect = 9e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| ||||| || ||||||||||| || ||||| || || | | || | || || Sbjct 15336136 CACCAAGTGCAAGGTTGACTCTTTTTGGATGTTGTAGTCGGAAAGAGTGCGACCATCTTC 15336195 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||| ||| ||| |||| ||| ||||| || | || || |||||||| || Sbjct 15336196 CAATTGCTTGCCAGCAAAGATTAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 15336255 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || | | || || || |||| || || ||||| || || || Sbjct 15336256 GATCTTGGCTTTGACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 15336315 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || ||||| || || || ||||| Sbjct 15336316 ACCCGTTAGGGTTTTAACAAAGATCTGCAT 15336345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318751022017218