Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq6838 84.2 2e-11 >seq6838 Length=24764193 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||| ||| || || ||||| || || ||||||||||| || || | ||||||| Sbjct 2123332 ACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCTTCC 2123273 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| ||||| || | || || | ||| || || ||| | ||||| ||||| | Sbjct 2123272 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 2123213 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||||| | ||| | |||| || ||| |||| ||| ||||||||| Sbjct 2123212 ATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTTTTG 2123153 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||| || || || || |||||||| Sbjct 2123152 CCAGTCAGGGTCTTCACGAAGATTTGCAT 2123124 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||| ||| || || ||||| || || ||||||||||| || || | ||||||| Sbjct 2124244 ACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCTTCC 2124185 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| ||||| || | ||||| | ||| || || ||| | ||||| ||||| | Sbjct 2124184 AGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 2124125 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||||| | ||| | |||| || ||| |||| ||| ||||| ||| Sbjct 2124124 ATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 2124065 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||| || || || || |||||||| Sbjct 2124064 CCAGTCAGGGTCTTCACGAAGATTTGCAT 2124036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||| || || ||||||||||| || || ||||||| Sbjct 2124700 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCC 2124641 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| ||||| || | || || | ||| ||||| ||| | ||||| ||||| | Sbjct 2124640 AGTTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2124581 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||||| | ||| | |||| || ||| |||| ||| ||||||||| Sbjct 2124580 ATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTTTTG 2124521 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||| || || || || |||||||| Sbjct 2124520 CCAGTCAGGGTCTTCACGAAGATTTGCAT 2124492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419552217048321