Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6839 125 6e-24 >seq6839 Length=26866924 Score = 125 bits (138), Expect = 6e-24 Identities = 531/828 (64%), Gaps = 8/828 (1%) Strand=Plus/Plus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||||| |||| |||| || || ||||| || || || || | ||| || | || Sbjct 3409426 TTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGCGAGATCATCTC 3409485 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC-CCTAATTCTAGTAACA 12980 |||||| ||| ||||| |||| | ||| ||||| || || | ||| | |||| Sbjct 3409486 CATAAAGGTGAATGGATTCTTCGTATTGTAG-ATTTTGCCAACACCGAGTTCCACCAACA 3409544 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 | || |||||||| || || ||||| ||| || |||| ||||| || || || | Sbjct 3409545 GACGATCCGCAACAAATTCAATATACTGGGACATCAATGCACAATTCATGCCAATCAAGT 3409604 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGT 13100 | || |||| ||| ||||| | ||| | || || || ||| || || | || | Sbjct 3409605 TGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATGATCT 3409664 Query 13101 CTCTTATTACGTTCTCTAAT-GGAGGATTTGATAGATGCTTAAACATCAT-ACATGCAAA 13158 | | | | || || | | ||| | | | |||| |||||||| ||| ||||| Sbjct 3409665 CAATGA-TGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACATCATCACA-GCAAA 3409722 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||| ||||| || || || | || | ||| || || || || ||||| ||||| Sbjct 3409723 GTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGGTCAGACCGGGCAT 3409782 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || || ||||| || | |||||| || | ||||| || ||| || ||||| || Sbjct 3409783 CAGACCACGTTTCTTCAGCCAAAAGATCGAGGCAAAGCTGCCACTAAAGAAGATTCCCTC 3409842 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCCACT 13337 || || || ||||| || | || || ||| | || | | | | ||||| Sbjct 3409843 CACGGCAGCGAACGCAATGATTCTCTCGCCA-AAGTTCGCGGCCTTCGATGAAATCCAAG 3409901 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 ||||| | || ||| | || || | ||| |||| | || || || | || Sbjct 3409902 AGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAACGGCATTGAACAGAT 3409961 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 ||| ||||| || |||||| ||||| |||| | ||| ||||| || || | Sbjct 3409962 AATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGT 3410021 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517 | | ||| ||||| || ||||| || ||||| ||||| | ||| || | || || || | Sbjct 3410022 GCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCT 3410081 Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 | | || | || | | || || ||||| || || || ||| ||||| || | Sbjct 3410082 CCTGGCTGAAGCGCTCGACAAGATTCTCATTAACAATGCCATCGGAAGCGGCAAAGAAGG 3410141 Query 13578 CAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAAT 13637 | || | || ||||| | ||||| || | || | ||| || | || | Sbjct 3410142 CGAGCACATGGGAGATAAAGTGGCGCTCGTTATCAGTTAAACGTGCCCAGTCGGTCAAGT 3410201 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | || || | ||| |||||||| || ||||| || || || | |||| Sbjct 3410202 CCTTAGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGCCT 3410249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430946466977082