Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq6840 113 4e-20 >seq6840 Length=32352404 Score = 113 bits (124), Expect = 4e-20 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || || || ||||| | || || || || || || |||| |||||| || | Sbjct 674836 CCCGTGGAGCCAAATCCTGCCTCTCCACGTTCAGTATCCTCCAGTTTGTTAACTTCCTCT 674895 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | | || | | |||||||||||||| | ||| || || | ||| || | ||| || Sbjct 674896 AATTCCGGATAGAAGATGCGTTCGCATATGAACTGGGCAATGCGGTCGCCATGCTTCACT 674955 Query 5360 TCAAAGTCGCTGTTTCCGA--AGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 || |||| | || ||||| || || || || || || | ||| || || || || | Sbjct 674956 TCGAAGT--CCGTGTCCGAGTGATTGAAGAGGACAACACCTAAATTTCCGCGATAATCCT 675013 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||| | ||| || |||||||| |||||||||| || || || || |||||||| |||| Sbjct 675014 CGTCCACAACACCGGCGCCCACATCGATAAAGTTCTTTACGGCCAGCCCGGAACGCGGTG 675073 Query 5478 CTATGCGTCCGTA 5490 ||| ||| ||||| Sbjct 675074 CTACGCGACCGTA 675086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447712111743920