Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6838 107 2e-18 seq5292 107 2e-18 seq6840 95.1 1e-14 >seq6838 Length=24764193 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| |||||||||||||||| ||| || | || ||||| || Sbjct 2123327 ATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCTTCCAGTTG 2123268 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| || || | || |||||||||| |||||| Sbjct 2123267 CTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATTTT 2123208 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | | |||||||||| | |||| ||| | || |||||||| || || Sbjct 2123207 AGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTTTTGCCAGT 2123148 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || ||||| Sbjct 2123147 CAGGGTCTTCACGAAGATTTGCAT 2123124 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || |||||||||||||||||| |||| || || | || ||| Sbjct 2125156 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 2125097 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || ||||| ||| | | || | |||||||||||| || | || |||||||||| | Sbjct 2125096 AGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2125037 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | | |||||||||| || |||| ||| | || ||||| || Sbjct 2125036 ATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGTCTTG 2124977 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| || || ||||| Sbjct 2124976 CCAGTCAGGGTCTTCACGAAGATTTGCAT 2124948 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| |||||||||||||||| ||| || | || ||||| ||||| ||| || | Sbjct 2124454 TCCTTCTGAATGTTGTAATCAGACAAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAG 2124395 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | || |||||||||| ||| || ||| | | | Sbjct 2124394 ATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTTAGCCTTCACATTC 2124335 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | |||||||||| | |||| ||| | || |||||||| || || || || ||||| Sbjct 2124334 TCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACG 2124275 Query 48716 AAAATCTGCAT 48726 || || ||||| Sbjct 2124274 AAGATTTGCAT 2124264 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| |||||||||||||||| ||| || | || ||||| || Sbjct 2124239 ATGAAGGGTCGATTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCTTCCAGTTG 2124180 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| || || | || |||||||||| |||||| Sbjct 2124179 CTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAATTTT 2124120 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | | |||||||||| | |||| ||| | || ||||| || || || Sbjct 2124119 AGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 2124060 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || ||||| Sbjct 2124059 CAGGGTCTTCACGAAGATTTGCAT 2124036 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || ||||| || ||||||||||||| ||| || | || ||| Sbjct 2124700 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCTTCC 2124641 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || ||||| || || | || | |||||||||||| || | || |||||||||| | Sbjct 2124640 AGTTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2124581 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||| | | | | |||||||||| | |||| ||| | || |||||||| Sbjct 2124580 ATTTTAGCCTTCACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTTTTG 2124521 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| || || ||||| Sbjct 2124520 CCAGTCAGGGTCTTCACGAAGATTTGCAT 2124492 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || ||||| || || ||||| |||| ||| || | || ||| Sbjct 2122420 ACCAAATGAAGGGTCGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCC 2122361 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || ||||| ||| || | || | |||||||||||| || | || |||||||||| | Sbjct 2122360 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2122301 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | | |||||||||| || ||| ||| | || ||||| || Sbjct 2122300 ATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCAACCTCCAGAGTGATGGTCTTT 2122241 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | |||||| || || |||||||| Sbjct 2122240 CCCGTCAAAGTTTTAACGAAGATCTGCAT 2122212 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || ||||| || |||||||| |||| ||| || |||| ||| Sbjct 2124016 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGACCGTCTTCC 2123957 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || ||||| ||| || | || | |||||||||||| || | || |||||||||| | Sbjct 2123956 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 2123897 Query 48638 ATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 || || ||| | ||| | |||||||||| || |||| ||| | || ||||| Sbjct 2123896 ATCTT-GGCT---TTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGT 2123841 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || ||||| || || ||||| Sbjct 2123840 CTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 2123808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| || || ||||| |||| ||| || | || ||||| || Sbjct 2123555 ATGAAGGGTCGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCCAGTTG 2123496 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| || | || |||||| ||| ||| || Sbjct 2123495 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTATCCTGAATCTT 2123436 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | | |||||||| | | |||| ||| | || |||||||| || || Sbjct 2123435 AGCCTTCACATTCTCAATGGTATCTGATGGCTCCACCTCCAGAGTGATGGTTTTGCCAGT 2123376 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || ||||| Sbjct 2123375 CAGGGTCTTCACGAAGATTTGCAT 2123352 >seq5292 Length=4599 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || |||||||||||||||||| |||| || || | || ||| Sbjct 1830 ACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 1771 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || ||||| ||| | | || | |||||||||||| || | || |||||||||| | Sbjct 1770 AGTTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGA 1711 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | | |||||||||| || |||| ||| | || ||||| || Sbjct 1710 ATCTTAGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGTCTTG 1651 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| || || ||||| Sbjct 1650 CCAGTCAGGGTCTTCACGAAGATTTGCAT 1622 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||| || || ||||| |||| ||| || | || ||||| || Sbjct 685 ATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCCAGTTG 626 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| || | || |||||||||| ||| || Sbjct 625 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGAATCTT 566 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | | |||||||||| || |||| ||| | || ||||| || || || Sbjct 565 AGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAGAGTGATGGTCTTGCCAGT 506 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || ||||| Sbjct 505 CAGGGTCTTCACGAAGATTTGCAT 482 >seq6840 Length=32352404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| || || | ||| |||||| ||||||||||| || | || | || || | |||| Sbjct 311352 CACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTG-CGTCCATCCT 311294 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || |||||||||||||| || | | || |||||| Sbjct 311293 CCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTGTCCT 311234 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | | ||||| || | | ||| ||| | || ||||| | Sbjct 311233 GGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCT 311174 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||||||||||||| || || || ||||| Sbjct 311173 TGCCGGTGAGAGTTTTAACGAAGATTTGCAT 311143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421216078312841