Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq6832 116 2e-21 seq6839 114 7e-21 seq6841 105 3e-18 >seq6832 Length=2735782 Score = 116 bits (128), Expect = 2e-21 Identities = 82/92 (89%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 11442 ATAAAAAAT-CAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||||| ||| ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 1698970 ATAAAAAATACAAGAATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 1698911 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| |||| |||||||||||||||| Sbjct 1698910 ACGACGCTCTAACCAGCTGAGCTAATGGGCCG 1698879 >seq6839 Length=26866924 Score = 114 bits (126), Expect = 7e-21 Identities = 89/105 (85%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCT 11485 || || |||| || |||||| |||| |||||||||| |||||||||| |||||| Sbjct 13658418 AATTAAAGAAAAAAAGAAAAAT-AAATGGCTGGCCCATGAGGGGATCGAACCCGCGACCT 13658360 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 13658359 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 13658315 Score = 114 bits (126), Expect = 7e-21 Identities = 88/104 (85%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| ||| | || | |||||||| || ||||||||| |||||||||| ||||||| Sbjct 21019802 AAAAATAAATTTTACAAAAAATCTGATCATGGCCCATGGGGGGATCGAACCCGCGACCTT 21019743 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||| |||| |||||||||||||||| Sbjct 21019742 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 21019699 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 25288106 ATAAAAAAAGTAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 25288047 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 25288046 GACGCTCTAACCAGCTGAGCTAATGGGCC 25288018 Score = 111 bits (122), Expect = 8e-20 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| | |||| || ||||||||| |||||||||| ||||||||||||||||| Sbjct 13663571 AATTAAAAGAAAAAAAATCTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTA 13663512 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||| ||||||||||||||| Sbjct 13663511 GCACGACGCTCTAACCAGCTGAGCTAATGGGCC 13663479 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 25288284 TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 25288225 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 25288224 CTGAGCTAATGGGCC 25288210 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 25287920 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 25287861 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 25287860 TGAGCTAATGGGCC 25287847 >seq6841 Length=34148556 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 10245044 TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 10245103 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 10245104 CTGAGCTAATGGGCC 10245118 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261469398252916