Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6841 188 1e-43 seq6840 179 6e-41 seq5933 179 6e-41 seq3120 179 6e-41 seq197 179 6e-41 >seq6841 Length=34148556 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 7233892 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 7233951 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| |||||||| | |||||||||| | Sbjct 7233952 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATCTCTGGACTAATCTATGAAGAAACC 7234011 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || |||||||| Sbjct 7234012 CGTGGCGTTCTCAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATATACCGAA 7234071 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 7234072 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 7234131 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 7234132 CGTACACTGTACGGTTTTGGCGGTTAA 7234158 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 7258658 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 7258717 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| |||||||| | |||||||||| | Sbjct 7258718 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATCTCTGGACTAATCTATGAAGAAACC 7258777 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || |||||||| Sbjct 7258778 CGTGGCGTTCTCAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATATACCGAA 7258837 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 7258838 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 7258897 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 7258898 CGTACACTGTACGGTTTTGGCGGTTAA 7258924 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 7266201 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 7266260 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| |||||||| | |||||||||| | Sbjct 7266261 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATCTCTGGACTAATCTATGAAGAAACC 7266320 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || |||||||| Sbjct 7266321 CGTGGCGTTCTCAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATATACCGAA 7266380 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 7266381 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 7266440 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 7266441 CGTACACTGTACGGTTTTGGCGGTTAA 7266467 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 7274205 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 7274264 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| |||||||| | |||||||||| | Sbjct 7274265 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATCTCTGGACTAATCTATGAAGAAACC 7274324 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || |||||||| Sbjct 7274325 CGTGGCGTTCTCAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATATACCGAA 7274384 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 7274385 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 7274444 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 7274445 CGTACACTGTACGGTTTTGGCGGTTAA 7274471 Score = 122 bits (134), Expect = 1e-23 Identities = 100/119 (84%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||| | | | || ||||||||||||||||| || || ||||| ||||| Sbjct 31166826 GCCAAGCGCCATCGTA-AGGTGTTGCGAGATAACATCCAAGGTATTACTAAGCCGGCTAT 31166884 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | | |||||||||||||||||||||||||||||| | ||||||||| |||| || |||| Sbjct 31166885 CAGGCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTATTTCTGGATTGATCTACGAGGAGA 31166943 >seq6840 Length=32352404 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 6938028 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 6937969 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| | |||||| | |||||||||| | Sbjct 6937968 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATTTCTGGACTAATCTATGAAGAAACC 6937909 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || || ||||| Sbjct 6937908 CGTGGCGTTCTTAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATACACCGAA 6937849 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 6937848 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 6937789 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 6937788 CGTACACTGTACGGTTTTGGCGGTTAA 6937762 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 6944077 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 6944018 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| | |||||| | |||||||||| | Sbjct 6944017 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATTTCTGGACTAATCTATGAAGAAACC 6943958 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || || ||||| Sbjct 6943957 CGTGGCGTTCTTAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATACACCGAA 6943898 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 6943897 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 6943838 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 6943837 CGTACACTGTACGGTTTTGGCGGTTAA 6943811 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 6950093 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 6950034 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| | |||||| | |||||||||| | Sbjct 6950033 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATTTCTGGACTAATCTATGAAGAAACC 6949974 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || || ||||| Sbjct 6949973 CGTGGCGTTCTTAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATACACCGAA 6949914 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 6949913 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 6949854 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 6949853 CGTACACTGTACGGTTTTGGCGGTTAA 6949827 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 16707035 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 16707094 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| | |||||| | |||||||||| | Sbjct 16707095 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATTTCTGGACTAATCTATGAAGAAACC 16707154 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || || ||||| Sbjct 16707155 CGTGGCGTTCTTAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATACACCGAA 16707214 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 16707215 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 16707274 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 16707275 CGTACACTGTACGGTTTTGGCGGTTAA 16707301 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 16713036 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 16713095 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| | |||||| | |||||||||| | Sbjct 16713096 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATTTCTGGACTAATCTATGAAGAAACC 16713155 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || || ||||| Sbjct 16713156 CGTGGCGTTCTTAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATACACCGAA 16713215 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 16713216 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 16713275 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 16713276 CGTACACTGTACGGTTTTGGCGGTTAA 16713302 >seq5933 Length=6600 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 4562 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 4503 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| | |||||| | |||||||||| | Sbjct 4502 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATTTCTGGACTAATCTATGAAGAAACC 4443 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || || ||||| Sbjct 4442 CGTGGCGTTCTTAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATACACCGAA 4383 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 4382 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 4323 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 4322 CGTACACTGTACGGTTTTGGCGGTTAA 4296 >seq3120 Length=1541 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 974 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 1033 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| | |||||| | |||||||||| | Sbjct 1034 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATTTCTGGACTAATCTATGAAGAAACC 1093 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || || ||||| Sbjct 1094 CGTGGCGTTCTTAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATACACCGAA 1153 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 1154 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 1213 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 1214 CGTACACTGTACGGTTTTGGCGGTTAA 1240 >seq197 Length=818 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || ||||| ||||| || ||||| |||||||||||| Sbjct 313 GCAAAGCGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGTATCACGAAGCCAGCTATC 254 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | |||||||||||||| || ||||| | |||||| | |||||||||| | Sbjct 253 CGTCGTTTAGCTCGTCGTGGTGGCGTGAAGCGAATTTCTGGACTAATCTATGAAGAAACC 194 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| |||| | | | ||||| | |||||| || || ||||| Sbjct 193 CGTGGCGTTCTTAAGGTCTTTTTGGAAAATGTTATTCGCGATGCTGTCACATACACCGAA 134 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | ||||| ||||| |||||||| | |||||||||||||| | ||||| Sbjct 133 CATGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTCTATGCATTGAAGAGGCAAGGT 74 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || |||||||| ||||| Sbjct 73 CGTACACTGTACGGTTTTGGCGGTTAA 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068945225813