Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20mojavensis_20[refseq_20GCF_5F000005175.2_202006-06-30] 6,841 sequences; 193,826,310 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6840 165 8e-36 seq6839 163 3e-35 seq6838 89.7 5e-13 >seq6840 Length=32352404 Score = 165 bits (182), Expect = 8e-36 Identities = 492/745 (66%), Gaps = 18/745 (2%) Strand=Plus/Minus Query 147450 TGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTA 147509 || || || || |||||| ||||||| |||| |||| || | ||| | || |||| Sbjct 31472805 TGGTGGTTCACTACTTGAAACTCGCCAGACAATACTCGTCTTGTGTAAATGTTTGAAGTA 31472746 Query 147510 AACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAA 147569 | |||||||||||||| || || || | || || || || | ||| || |||||| | Sbjct 31472745 TAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCTGTAGATGCTGTAGGCATGGGA 31472686 Query 147570 GCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAG 147629 || || | ||| ||||| | | ||||| || || | ||||| | | |||| Sbjct 31472685 GCGATGAGTAAAGAATTTCTGACACCGTGTTGCGCTATAGATTTTTTAAGAGCATTCCAG 31472626 Query 147630 TTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTT 147689 | ||||||||| | | || || | ||||||| |||| |||| |||| ||| ||| Sbjct 31472625 TCCCAAAGATCTGTTG-GTGATT--TGTTCCACATATCATACTGCAAAATTCCTTTGCTT 31472569 Query 147690 GCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGA 147749 | || || ||| |||||| || |||| ||| | | ||| | ||| || || Sbjct 31472568 ACTGGACTGCCAACGTAAGTCTCATATGGTCCATCTCTCTGAGCCAATTCACAAC--TGG 31472511 Query 147750 CTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTT 147807 ||| | || ||||| || |||||||| |||||| | |||||| || || Sbjct 31472510 CTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAGAAATGCTTCAC 31472451 Query 147808 GGCTGTCGTAGGGCATATC-CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATA 147866 | || ||||| || ||| | || | || | ||||||| ||||| | || ||| Sbjct 31472450 GACTTTCGTA-GGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTGGACTCCAATA 31472392 Query 147867 CCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAG 147926 || || || ||||| | ||||| ||| || ||| | ||| || || |||| | Sbjct 31472391 CCAATAGGACGGTGACGTAAATTAGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATA 31472332 Query 147927 TCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAG 147986 || || |||||||| | || || ||||| | | ||| ||||| | ||| |||||| Sbjct 31472331 TCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACATCTTTAAGCTTTTTAAAG 31472272 Query 147987 TC-GAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACA 148045 || ||| ||| || | | |||| |||| | || || || ||||| ||||| Sbjct 31472271 TCATAAGATTT----CTCCTGCGTCACAAACATATTAAGTGCGATTGACGCCAAATTACA 31472216 Query 148046 CACGGCCGTTTC-TCGATTGTCGCTATATTGAACGATTTCGGCACACAGATTGCTGTTTC 148104 ||| || |||| || || || ||||| ||| ||||| | |||||||| ||| | Sbjct 31472215 CACAGCTATTTCATCTGGTGCCG-AATATTCAACTATTTCTGTGCACAGATTACTGCATT 31472157 Query 148105 GAATCACTCCCTCGtttttttGATTATTTTTATTGTTA-ACGTGATCTTTAAACATCATG 148163 || ||| | |||| ||| || |||| ||||| | | | || ||||| | |||| Sbjct 31472156 TTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAG-TCCTTAAATAACATG 31472098 Query 148164 TATGGAGCTCCGGTCTCGACTTGAG 148188 || |||| || ||||| ||||||| Sbjct 31472097 TAAGGAGTACCAGTCTCTACTTGAG 31472073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | ||||| ||||| |||| || || | ||||| | || | ||| | Sbjct 15336349 CACAATGCAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACC 15336290 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || ||||||||| | |||||| ||||| ||||||||||| || ||||| || Sbjct 15336289 GTCGGATACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGA 15336230 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || | || || | | ||||| ||| | ||||||| | | | | |||||| Sbjct 15336229 TCAGCAGCGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTA 15336170 Query 26945 TAACATTCAAAAAGAATCTAC 26965 ||||| |||||||| || || Sbjct 15336169 CAACATCCAAAAAGAGTCAAC 15336149 >seq6839 Length=26866924 Score = 163 bits (180), Expect = 3e-35 Identities = 216/297 (73%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 || || || ||||| | || |||| ||||| ||| || || ||||| ||||| | Sbjct 677451 GACGATCTGTGGAACTCGGCCCAGCTGCAGCTGGTCAAGGAAGGCAAAATGCACGGGTTT 677510 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797 || |||||||| ||||||||||||||| | |||||||| |||| || || || ||||| Sbjct 677511 CTGCGCATGTATTGGGCCAAAAAGATTTTAGAGTGGACCGAAACGCCGGAACAAGCGCTT 677570 Query 71798 GAGTATTCTAT-TTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTA 71856 |||||| || |||| | ||||| | |||||||| || || |||||||| || || || Sbjct 677571 GAGTATAGCATATTAT-TGAACGACAAGTACAGTCTGGATGGACGCGATCCGAATGGCTA 677629 Query 71857 TGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGT 71916 || |||||||||||| ||| | || ||||||| | ||| || || | Sbjct 677630 CGTTGGTTGCATGTGGTCCATCGGTGGGATTCACGACCAAGGCTGGAAGGAGCGCGCGAT 677689 Query 71917 GTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973 |||||||| |||||||||||||| | | || ||| | ||||||||| |||| || Sbjct 677690 ATTTGGTAAGATTCGCTATATGAACTATCAAGGCTGCAAGCGCAAGTTCGATGTCAA 677746 >seq6838 Length=24764193 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | ||||| ||| | |||||| | || | || || | Sbjct 2122668 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2122727 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | || || |||||| ||||| ||||| || || || || ||| Sbjct 2122728 GATACCATTGAGAATGTGAAGGCTAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAA 2122787 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || |||||| ||||| ||||||| | | | | | ||||| || Sbjct 2122788 CAGCGTCTTATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGACTACAAT 2122847 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || | ||||||||||| Sbjct 2122848 ATCCAGAAGGAATCGACCCTTCATCTGGTCCT 2122879 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | ||||| ||| | |||||| | || | || || | Sbjct 2123124 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAGCCATCC 2123183 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| ||| | || || || ||| ||||| ||||| || || || || || Sbjct 2123184 GATACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 2123243 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || |||||| ||||| ||||||| | | | | | || || ||| Sbjct 2123244 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCTGATTACAAC 2123303 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||||| || | ||||||||||| Sbjct 2123304 ATTCAGAAGGAATCGACCCTTCATCTGGTCCT 2123335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478621468381520